Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2011 ATGTTCTTGCTAAGCTTGAAATCACTAGTTACCAAAGCACAACCACCCTTTTATTTGGGAGATGACTGTGATTTCACCCCCCAAAAGCCTCTCAGCAATGCATACAAAACCAACATTAACAACATCCTCTCATGGCTATCCTCAGATGCAGCCACAAGCAAAGGCTATAACTACAAAACCATAGGCAACAACACCCCTGTGTATGGCCTCTATGACTGCCGTGGTGATGTGGTTGGCTACTTCTGCCAATTCTGTGTCTCTGCTGCTTCCAGAAGACTCCTTCAGCACTGCCCTAATAGATTCTCTGCTGTCATGTACTACAACTTCTGCATTCTGAGGTACTCTAACGAGAACTTCATTGGCAATGTTACAATAAACCATCCAAGACATCATGTTGGGAACAAAAGTGTGTCTAGTGTAGAAGAGATTCAAAAGAGTGAGGATTTCATGAGGAGTTTGATCATAAAAGCAACTGTGGAGACCAACCAGTTGTACTACATGGATGGCTTCAATTTGAGCTCCACTCAGAGAAGGTATGGCTTGGTGCAGTGCACCAGAGACCTCACCAGTGAGAAGTGCAGACAGTGCTTGGAGGCCATGCTAGCACAAGTTCCCCAATGTTGTCAACATAACTTGGGGTGGCTGGTAGGAACTGCAAGTTGTCACATAAAGTATGATGATTATATGTTCTACCTTTTCAACAATCAATCATATATTTTGCCCAGTTTAACAGCTAAACAAGGGGATGCAAGTAAGTCAAGAAACTTGATCATTGGATTGAGTGTGGTGGGGTTAGCAGCTGTGTGTTTGAGTGTATATTGTTTATGTTACTGGAATAGAGTTAGAAAAGATGGGCTCATAAATGATTCTATTCCTCTATCTGCATATACAAATTTGCCTATAATCCCATTAACCACCATTCTTGAGAGTACTCATGACTTCTCAGAAACATCTAAGTTAGGTGAAGGTGGATTTGGCCCAGTTTACAAGGGAATTCTACCGGATGGAAGAGAAGTTGCAGTGAAAAGGCTCTCAAAAGCTTCTAGTCAAGGCTCAGAGGAGTTTAAGAATGAAGTAACATTTATAGCTAAATTGCAACATTGCAACCTTGTAAGACTTGTGGCATGCTGCTTGGAGGAAAATGAAAAGATACTAGTATATGAGTATTTGTCAAATGCAAGTCTTGATTTTCACCTATTTGATGATGAAAAAAGGAAGCAACTTGATTGGAAACTAAGGTCAAGCATCATCAATGGAATAGCAAGAGGTCTTTTATATCTTCATGAGGACTCTAGACTCAAGGTAATCCACAGAGATCTCAAAGCTAGCAATGTTCTGTTAGACGATGAAATGAATCCAAAAATATCAGATTTTGGATTGGCAAGAGCATTTGAAAATGGTCAGAACCAGGCAAATACAAACCGAATAATGGGAACTTATGGCTACATGGCTCCAGAGTATGCTATGGAAGGATTGTTTTCAATGAAATCTGATGTTTTCAGCTTTGGAGTACTTGTTCTAGAAATCATTTGTGGGAAAAAGAACAGTGGATTTTTTCTATCAGAACATGGTCAAAGTCTTCTTTTATATAGTTGGAGAATGTGGTGTGCAGGAAAATGTTTGGAATTGATGGATCCATTGTTAGAAAATTCCTACACATCCAATGAAGTTGAGAAGTTTATACAGATTGGTTTATTGTGTGTTCAAGAAGCAGCAACAACTAGACCAACCATGTCCACTGTCATGGTGTTGTTGGCAAGTGATGTGATGACCATTCCAAAACCCAACAAACCTGCATTCTCAGTTGGAAGAGTGGAAACGTCTGCTTTAAAAACTTCCAAAAATATTTCCATTAATGATGTATCAATCTCTAGTATTGTACCAAGGTAA 1890 0.3963 MFLLSLKSLVTKAQPPFYLGDDCDFTPQKPLSNAYKTNINNILSWLSSDAATSKGYNYKTIGNNTPVYGLYDCRGDVVGYFCQFCVSAASRRLLQHCPNRFSAVMYYNFCILRYSNENFIGNVTINHPRHHVGNKSVSSVEEIQKSEDFMRSLIIKATVETNQLYYMDGFNLSSTQRRYGLVQCTRDLTSEKCRQCLEAMLAQVPQCCQHNLGWLVGTASCHIKYDDYMFYLFNNQSYILPSLTAKQGDASKSRNLIIGLSVVGLAAVCLSVYCLCYWNRVRKDGLINDSIPLSAYTNLPIIPLTTILESTHDFSETSKLGEGGFGPVYKGILPDGREVAVKRLSKASSQGSEEFKNEVTFIAKLQHCNLVRLVACCLEENEKILVYEYLSNASLDFHLFDDEKRKQLDWKLRSSIINGIARGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARAFENGQNQANTNRIMGTYGYMAPEYAMEGLFSMKSDVFSFGVLVLEIICGKKNSGFFLSEHGQSLLLYSWRMWCAGKCLELMDPLLENSYTSNEVEKFIQIGLLCVQEAATTRPTMSTVMVLLASDVMTIPKPNKPAFSVGRVETSALKTSKNISINDVSISSIVPR* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2011 629 Pfam Salt stress response/antifungal 147 228 IPR002902 -
Pvu11g2011 629 Pfam Salt stress response/antifungal 31 116 IPR002902 -
Pvu11g2011 629 CDD STKc_IRAK 320 581 - -
Pvu11g2011 629 Pfam Protein tyrosine and serine/threonine kinase 317 582 IPR001245 GO:0004672|GO:0006468
Pvu11g2011 629 Gene3D Transferase(Phosphotransferase) domain 1 390 592 - -
Pvu11g2011 629 ProSiteProfiles Gnk2-homologous domain profile. 125 230 IPR002902 -
Pvu11g2011 629 SMART serkin_6 314 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2011 629 Gene3D - 129 230 IPR038408 -
Pvu11g2011 629 Gene3D - 23 119 IPR038408 -
Pvu11g2011 629 ProSiteProfiles Gnk2-homologous domain profile. 16 119 IPR002902 -
Pvu11g2011 629 Gene3D Phosphorylase Kinase; domain 1 286 389 - -
Pvu11g2011 629 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 626 - -
Pvu11g2011 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Pvu11g2011 629 SUPERFAMILY Protein kinase-like (PK-like) 288 585 IPR011009 -
Pvu11g2011 629 ProSiteProfiles Protein kinase domain profile. 314 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2011 629 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 9 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2011 Pvu-Chr11 46973387 46976295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2011 9 629 Receptor kinase-like Gene Family AT4G05200 40.426 1.26e-161 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu11g2011 PK_Tyr_Ser-Thr 1.1e-47 CL0016