Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1990 ATGAGACGAGTGAGTAATGAAATTGAAGATGAGGTGCTTCCTAGTGATCTGAGTGCGGCACAGTTGAATGATGAGAGTTATGAAGGAAGTACCAGTATTGTTCTGAAGAAAGGTCCGTGGACATCAACCGAAGATGATATTTTGGTGGATTATGTTAACAAGCACGGGGAAGGGAATTGGAATGCTGTTCAGAAGCACACAGGGTTACTGCGTTGCGGAAAAAGTTGTCGGCTGCGATGGGCTAATCACCTAAGGCCAAATTTAAAGAAAGGGGCGTTTACTGCAGAAGAGGAGCGGTTCATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGCACCGATAATGAGATAAAGAATTATTGGAACACCCGGATCAAGAGGCGTCAACGGGCTGGGTTGCCACTTTATCCTCCTGAAGTGTGTTTGCAAGGTTTTCAAGAGAGTCAGCGTAACCAAAGTAATGGTGGACTTAATGGTGGCGATAAAATGCATCTTGATTTATTGCAGACAAATAGTTATGAAATACATGGTGCTATATTTGACAGTCTGAAGGATAATCAGGGAATCTTACCATATGCACCAAAGTTTCCCGATGCTTCTGTTTATGGCAATATGCTAAAAGGTCTTGATTCTTCTCAATATTGTAGTGTTATGACACCAGCATCACCTAAGCACAAGCGTCTTAGAGAGTCAACAATACCGTTTATTGGTTCCAATGATACGAGAAAAAACGGTTTATATCCATTTTCTCAAATTCGGGACAATAATTCTGATAAGATTGCACAATCATTTGGAATGCAAGCACTCCTTGATCCTGGTCCCTCATCACACAATTCAATGTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTTTGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTGATTTAGGTAGCTGGGGTACATCTCCCCCACCTCCTTTGCTCGAGTCAGTTGATGATTTCTTTCAGTCTCCTACACCAATTAGTACACTCGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCCTTACTTTATCAGGCAAAGACTCTGAGCAGTTCAAAGAACCATTGTTCTGACAAAAGTTCAAATTCTTCTACTGCAACCCCTGGTGACAGAGGCGACAGCTCTGCTTTGAATGTGTACGAGACAGAATGGGAAGATTACGCAGACCCTGTATCTCCCTTTGGTGCGACTTCAATATTGAATGAGTGCCCTGCTCTTCTTAGAGCCAGTGAGAATTCATTGGACGAACAGCTATCCTTCCAGGCATTTACAGGCAACATTCCAAAATTAGAGTTTGTTGATCAGGTTTGGACTCCTGAAAGTGAAAATCAAACCTTGTCCCTCTTGAACTTCACTCGTCCAGACTTCTTGTTTGCTTCAGACTGGCATGACTTAGGTTCTGGGAATGGCAAGAACCAAGCCATCACAACTGATACAACAATGACCCTTCTTGGAGACCATTTTGCCTCTGACCGTAAGCATATGACTTCTGGAACTTCTCAGTCAAGTCAGGTGTGGGGTTTTGGTTCTTGTGCTACGGCAAATAATATGCCTGCTCTGTGTCAGCTATCCGATCTTGGTTAA 1665 0.4336 MRRVSNEIEDEVLPSDLSAAQLNDESYEGSTSIVLKKGPWTSTEDDILVDYVNKHGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERFIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQGFQESQRNQSNGGLNGGDKMHLDLLQTNSYEIHGAIFDSLKDNQGILPYAPKFPDASVYGNMLKGLDSSQYCSVMTPASPKHKRLRESTIPFIGSNDTRKNGLYPFSQIRDNNSDKIAQSFGMQALLDPGPSSHNSMCYSHSLSNGNSSTSKPTFEAVKLELPSLQYPELDLGSWGTSPPPPLLESVDDFFQSPTPISTLESDCSSPQNSGLLDALLYQAKTLSSSKNHCSDKSSNSSTATPGDRGDSSALNVYETEWEDYADPVSPFGATSILNECPALLRASENSLDEQLSFQAFTGNIPKLEFVDQVWTPESENQTLSLLNFTRPDFLFASDWHDLGSGNGKNQAITTDTTMTLLGDHFASDRKHMTSGTSQSSQVWGFGSCATANNMPALCQLSDLG* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1990 554 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Pvu11g1990 554 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 550 - -
Pvu11g1990 554 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Pvu11g1990 554 CDD SANT 39 84 IPR001005 -
Pvu11g1990 554 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 550 - -
Pvu11g1990 554 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Pvu11g1990 554 CDD SANT 92 133 IPR001005 -
Pvu11g1990 554 MobiDBLite consensus disorder prediction 379 402 - -
Pvu11g1990 554 Gene3D - 92 138 - -
Pvu11g1990 554 SMART sant 89 137 IPR001005 -
Pvu11g1990 554 SMART sant 36 86 IPR001005 -
Pvu11g1990 554 MobiDBLite consensus disorder prediction 379 399 - -
Pvu11g1990 554 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Pvu11g1990 554 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Pvu11g1990 554 Gene3D - 36 89 - -
Pvu11g1990 554 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Pvu11g1990 554 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1990 Pvu-Chr11 46789437 46794291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1990 34 553 MYB Transcription Factor Family AT5G06100 43.019 8.39e-123 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu11g1990 Myb_DNA-binding 1.4e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0138 5 1115986 1120263 Pvu11g1990 11 46789437 46794291 PCT