Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1977 ATGGAAGAAGGGTTGGGCCAAAACTCAGTTCCTGGTTCTGGTTTGGTTGATAGAACTAGGATTGTAGAGGTTAAACCCCTGCGTAGTTTGGCACCTGTGTTGCCAAAATCTCTTCAACTTTCTACCTCTGGTCGGTACCCATCTGGGTTTCCTCCATTTGTTCTGTTTGAGGGACCCCAAGAGTCTCAGCCATCACCAACTCATATGCCAACTCCAATAAGGTCCTACAGGAAGCCACAAGATGGTGCAGAAGAAACCCCTGCTGGAGTCAATGGAGACACTTCTTCACCTATGGAGGATGTCAATGGCAAGAGTGTCGATGATAGCCCAAAGCGTCCTCTGCAGCCTATGAAGAACTGCAAATCATCCCAAAAAAGGCGTACAAAAACTCAGGATTCTGGTTCCAGTTCTTTGGTTGGTGGTATTAGCATAGCCCAAAGGGATGATGGTGATCGGGAAGTGGTTAATCTTGTGCTCATGACTTTTGATTCTCTTCGGAGAAGGCTCTGCCAACTTGAAGAGTCCAAGGAGTTGAACACAATATTGGGAGCCAAGCGCCCGGATTTAAGAGCAAGCAATGTGATGACAAGCAAAGCGTTTCGCACGAACATGTTGTCATGCTCAAGCATTGTCTCTTCAGGAGTGTATGATAATGATGCAGAGGATGAAGATGTTTTGATTTATACTGGTCAGGGTGAGAACTTCAACAAGAAAGACAAGCATGTGGTTGATCAGAAGCTTCATAGGGGTAATCTTGCTTTAGATAGAAGTTCATACCGAAAGAATGAAGTAAGAGTCATCCGGGGCTTGAGAGATGCTGGGAATAAAAATGCAAAAGTCTATGTCTATGATGGTCTGTATAAAATCCAAGATTCTTGGATAGAAAAAGGGAAGTCTGGTGGTGGTGTATTCAAGTACAAGTTTGTTAGATTGCCTGGTCAATCTAGTGCTTTTGCTATTTGGAAATCAGTTCAGAAGTGGAAGACAGGCTCATCTTCAAGGACCGGCCTTATTCTAGCTGACCTCTCCACAGGAGTTGAGAGTATTCCTGTATCACTTGTCAATGATGTTGATAACGAGAAGGGGCCTTCTTTTTTCACCTATTCCAACTCTCTCAGAGATTCAAAACCATTCAGTTTAGTGCAATCTTCATATGGCTGCAACTGTAACAAAACATGTGTCCCTGGTGATTTGAGCTGCTCTTGCATCCAAAGAAATGAAGGTGACTTTCCATATATTGCAAATGGTGTTCTAGTGAGTCGTAAACCATTGGTTCATGAGTGTGGCCCAATGTGTAAGTGCTTTCCTAACTGCAAGAATCGAGTATCGCAGGCAGGTTTGAAGCACCAAATGGAAGTTTTCAAAACCGAAAATAGAGGGTGGGGACTTCGATCATTTGATCCTATTCGTGCTGGTACTTTTATTTGCGAGTATGCAGGAGAAGTAATTGATAGAGCCAAGGTATATAAGAAAGGGGGTATTAATGATGATTATGTTTTTGATACAAGTCGTATTTACAATCCATTCAAATGGAATTATGAGCCTAGCTTATTGGAGGAAATAAGCTCAAATGTCTCTACTGAGGATTATACTATACCGTCTCCTCTAACTATCAGTTCTAAAAATTTTGGAAATGTGGCTAGATACATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCAGTCTTGTATGCAGAAAATAATCAATACTTTCTTCACATTGTATTTTTTGCCCTTGGACACATTCCTCCAATGACAGAGTTAACGTATGATTATGGTTGTTCTGGTCATGGTGATGGTAGTAGTGCACCCCAAGGGATAAAGAAATGCCTGTGTGGATCATCAAAATGCCGTGGTTCTTTTGGTTGA 1872 0.4215 MEEGLGQNSVPGSGLVDRTRIVEVKPLRSLAPVLPKSLQLSTSGRYPSGFPPFVLFEGPQESQPSPTHMPTPIRSYRKPQDGAEETPAGVNGDTSSPMEDVNGKSVDDSPKRPLQPMKNCKSSQKRRTKTQDSGSSSLVGGISIAQRDDGDREVVNLVLMTFDSLRRRLCQLEESKELNTILGAKRPDLRASNVMTSKAFRTNMLSCSSIVSSGVYDNDAEDEDVLIYTGQGENFNKKDKHVVDQKLHRGNLALDRSSYRKNEVRVIRGLRDAGNKNAKVYVYDGLYKIQDSWIEKGKSGGGVFKYKFVRLPGQSSAFAIWKSVQKWKTGSSSRTGLILADLSTGVESIPVSLVNDVDNEKGPSFFTYSNSLRDSKPFSLVQSSYGCNCNKTCVPGDLSCSCIQRNEGDFPYIANGVLVSRKPLVHECGPMCKCFPNCKNRVSQAGLKHQMEVFKTENRGWGLRSFDPIRAGTFICEYAGEVIDRAKVYKKGGINDDYVFDTSRIYNPFKWNYEPSLLEEISSNVSTEDYTIPSPLTISSKNFGNVARYMNHSCSPNVFWQPVLYAENNQYFLHIVFFALGHIPPMTELTYDYGCSGHGDGSSAPQGIKKCLCGSSKCRGSFG* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1977 623 ProSiteProfiles Pre-SET domain profile. 385 446 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu11g1977 623 Gene3D SET domain 336 622 IPR046341 -
Pvu11g1977 623 ProSiteProfiles SET domain profile. 449 594 IPR001214 GO:0005515
Pvu11g1977 623 Pfam SET domain 460 594 IPR001214 GO:0005515
Pvu11g1977 623 ProSiteProfiles Post-SET domain profile. 607 623 IPR003616 -
Pvu11g1977 623 SUPERFAMILY SET domain 348 620 IPR046341 -
Pvu11g1977 623 SUPERFAMILY PUA domain-like 204 344 IPR015947 -
Pvu11g1977 623 Pfam Pre-SET motif 343 441 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu11g1977 623 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 209 621 - -
Pvu11g1977 623 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 204 - -
Pvu11g1977 623 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 204 - -
Pvu11g1977 623 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 209 621 - -
Pvu11g1977 623 SMART G9a_1 174 314 IPR003105 -
Pvu11g1977 623 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 22 623 IPR025794 GO:0016571
Pvu11g1977 623 SMART preset_2 339 433 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu11g1977 623 ProSiteProfiles YDG domain profile. 162 310 IPR003105 -
Pvu11g1977 623 MobiDBLite consensus disorder prediction 51 144 - -
Pvu11g1977 623 SMART set_7 449 600 IPR001214 GO:0005515
Pvu11g1977 623 Pfam SAD/SRA domain 201 314 IPR003105 -
Pvu11g1977 623 Gene3D - 192 335 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1977 Pvu-Chr11 46694239 46696240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1977 12 623 Su(var)3-9 homologs AT5G04940 45.288 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu11g1977 SET 3.6e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1977 11 46694239 46696240 Pvu11g1977 11 46694239 46696240 ECH
Pvu5g0135 5 1064070 1067285 Pvu11g1977 11 46694239 46696240 PCT