Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1973 ATGAACATGGAAGGAGATAATGTTGAAAAGCCATTGTTGGAGAGGAAGAAGTACTTCGAGAATTGCCCTGGTTGCAAAGTGGACAAAGCCAAAGAGTTGAGTGAGGGACAGGGTGTACCCTTCAAAAATCTATTCATAATATGGATGGTGGTGCTGTGTGCTTCTATGCCTATTTCGTCTCTTTTTTCATACCTTTATTTCATGGTAAGGGATTTTAACATTGCAAAAACAGAAGCTGATATTAGTTTTTATGCTGGTTATGTGGGTTCTGCTTTCATGTTTGGAAGATGTTTGACATCTGTCCTGTGGGGAATTATAGCTGATCGATATGGTCGAAAGCCTGTTATAATGATAGGGATTATTGCAATTGTCCTTTTCAACACACTATTTGGCCTTAGTACCAGTTTTTGGATGGCAGTTATGATGAGATTTCTTCTGGGATGTTTTAGTGGTTTGCTTGGACCAGTGACGGCCTATGCTACTGAACTTGTTCGAGAAGAATACCAAGCTCTAGGAGTCTCAAGTGTTACTGCATCTTGGGGCGCAGGTTTAATCATTGGCCCAGCATTGGGAGGTTATTTGGCTCAGCCAGTGGAGAAGTATCCACATATATTTCCAAAGAATTCCTTCTGGGATAAGTTTGCTTACTTCTTCCCCAACTTTATAATATCAGCATTTGCTTTTGTTGTAGCTGTTGGCTGTATTTGGATTCCGGAAACACTTCACAATCATAAATGTAGCAATGAATCCATAGACAATGTTGAAGCTTTAGAAGTTGGAAACAGAGTGGTTGGTATAGACAAGACAATTCAAAAGAAGGAGAAACTCTTCTTGAACTGGCCCTTAATGTCATCTATCATTATCTTTTGTGTTTTCTCCCTTCATGATGGTGCTTATCATGAGGTTTTCTCCTTATGGACTGTGAGTCCTCAAAGACTGGGGGGTTTGAACTTTACAACTAACGATGTTGGTAATGTTCTTTCAATATCAGGTCTTGCAGTTATCATTTACCAACTTACTATCTATCCATATGTGCGAAAAGCTAGTGGACCTATTGGAATTGCCCGCATCTCAGGGATACTAACCATTCCACTTCTGCAAAGCTACACCTTCATAGGATACTTATCAGGCTTAGCAATGTTCATACTGATAAGTATTGCTTCAATTCTGAAGAATATTCTGGCTGTGACCATTACAACTTGTCTGTTACTTCTACAAAACCGAGCAGTGGAACAATACCAAAGGGGTGCAGCTAATGGCATTTCTATGACAGGCTTGTCTCTTTTCAAAGCTATTGGCCCTGCTGGAGGTGGTGCATTATTAACTTTGTCACAGAAGCGAATGGATGCTTCATTCCTCCCAGGCACTCAGATGGTGTTCTTTATCCTGAACACAGTTGTAGCACTTGGAACACTAATGACTTTCAAACCTTTCCTTGTCGAAAAGAGGAAAACACAAACGAATCAGTTAAGCTGA 1476 0.4024 MNMEGDNVEKPLLERKKYFENCPGCKVDKAKELSEGQGVPFKNLFIIWMVVLCASMPISSLFSYLYFMVRDFNIAKTEADISFYAGYVGSAFMFGRCLTSVLWGIIADRYGRKPVIMIGIIAIVLFNTLFGLSTSFWMAVMMRFLLGCFSGLLGPVTAYATELVREEYQALGVSSVTASWGAGLIIGPALGGYLAQPVEKYPHIFPKNSFWDKFAYFFPNFIISAFAFVVAVGCIWIPETLHNHKCSNESIDNVEALEVGNRVVGIDKTIQKKEKLFLNWPLMSSIIIFCVFSLHDGAYHEVFSLWTVSPQRLGGLNFTTNDVGNVLSISGLAVIIYQLTIYPYVRKASGPIGIARISGILTIPLLQSYTFIGYLSGLAMFILISIASILKNILAVTITTCLLLLQNRAVEQYQRGAANGISMTGLSLFKAIGPAGGGALLTLSQKRMDASFLPGTQMVFFILNTVVALGTLMTFKPFLVEKRKTQTNQLS* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1973 491 CDD MFS_SLC46_TetA_like 47 476 - -
Pvu11g1973 491 ProSiteProfiles Major facilitator superfamily (MFS) profile. 43 482 IPR020846 GO:0022857
Pvu11g1973 491 Pfam Major Facilitator Superfamily 47 389 IPR011701 GO:0022857|GO:0055085
Pvu11g1973 491 PANTHER MAJOR FACILITATOR SUPERFAMILY-RELATED 3 489 - -
Pvu11g1973 491 PRINTS Tetracycline resistance protein signature 116 140 IPR001958 GO:0022857
Pvu11g1973 491 PRINTS Tetracycline resistance protein signature 173 195 IPR001958 GO:0022857
Pvu11g1973 491 PRINTS Tetracycline resistance protein signature 347 367 IPR001958 GO:0022857
Pvu11g1973 491 Gene3D MFS general substrate transporter like domains 41 475 IPR036259 -
Pvu11g1973 491 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 3 489 - -
Pvu11g1973 491 SUPERFAMILY MFS general substrate transporter 42 484 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1973 Pvu-Chr11 46652669 46659245 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1973 11 46652669 46659245 Pvu11g1973 11 46652669 46659245 ECH