Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1970 ATGGAAGAGGAGAATGTTGAACAGCCATTGTTGGAGAGGAAGAAGTACTATGAGAACTGCCCCGGTTGCAAAGTGGATAAAGCCAAAGAGCTGAGTGAGGGACAGGGTGTGCCTGTTACAAAGCTTTTTATCATGTGGATGTTGGCGTTGTGTGCTGCACTGCCAATATCATCTCTGTTTCCATTCATCTATTTCATGGTAAGGGATTTTAATATTGCGAAAACAGAAGCTGATATTAGTTCTTATGCTGGTTATGTGGGTTCTGTATTCATGCTTGGCAGATGTTTGACATCTTTGTTGTGGGGAGCTTTAGCTGATCGCATTGGTCGAAAACCCATTATACTTGCAGGGATCATTGCAGTTGTCATTTTCAACACACTGTTTGGCCTTAGCACAAGTTTTTGGATGGCTATTGTTACGAGATTTCTTCTGGGGAGTTTCAATGGTTTTCTAGGACCACTGAGGGCCTATGCAGCTGAACTTTTTAGAGAAGAACACCAAGCTCTAGGACTGTCAACTTTAAGCTCAGCTTGGGGCATTGGTTTAATAATTGGCCCATCATTGGGAGGCTATTTGGCTCAGCCAGTAGAGAAGTACCCAAATATTTTTCCAAAGGATTCCTTTTGGGATAAGTTTCCATACTTCTTGCCCAACCTCATAATATCAGTATTTGCATTTGTAGTAGCAATTGGCTGCATCTGGATTCCAGAAACACTTCACAACCACAATTGTAGCAATGAATCCATAGAGTATGCTGAAGCTTTAGAAAATGGAAGTGGTGGCGTAGGCAATAAAAAGATAATAAAAAGGAATGAAAATCTTCTCATGAATTGGCCCTTAATGTCATCTATCATTGCTTATTGTGTCTTCTCACTTCATGATATCGCTTATCAAGAGATTTTCTCGTTATGGGCAGTGAGTCCTCCAAAGCTAGGGGGTTTGAACTTCACAACTAATGATGTTGGTAACATTCTTTCAATATCAGGTCTTGCACTTATTATTTACCAACTTACCTTGTTCCCTTGTGTGGAAAAAGCTAGTGGAGCTATTGGTATTGCTCGCATTTCATCGATGTTATCCATTCCTCTTTTGCAAAGCTACCCCTTCATTGCATTGTTGTCAGGCTTAGCACTACACATAGTGTTAAGTACTGCTTCAATTCTGAAGAATATTCTGTCTATCACCATCGTGACTGGTTTGTTCCTTCAACAAAACCGAGTAGTGGAACAACACCAAAGAGGGGCTGCTAATGGCATTGCTATGACAGGCATGTCTCTATTCAAAGCTATTGGCCCTGCAGCAGGTGGTTCAGTATTAGCTTGGTGCCAAAAGCGGATGGATTCTTCATTCCTCCCAGGCACACATATGGTGTTCTTAGTCTTGAACATAGTTGAAGTAGTTGGATTACTAATGATGTTCAAACCATTCTTTGTTGAGAAAAAGAAACCGCACACAGATCAATTACAGTGA 1470 0.4095 MEEENVEQPLLERKKYYENCPGCKVDKAKELSEGQGVPVTKLFIMWMLALCAALPISSLFPFIYFMVRDFNIAKTEADISSYAGYVGSVFMLGRCLTSLLWGALADRIGRKPIILAGIIAVVIFNTLFGLSTSFWMAIVTRFLLGSFNGFLGPLRAYAAELFREEHQALGLSTLSSAWGIGLIIGPSLGGYLAQPVEKYPNIFPKDSFWDKFPYFLPNLIISVFAFVVAIGCIWIPETLHNHNCSNESIEYAEALENGSGGVGNKKIIKRNENLLMNWPLMSSIIAYCVFSLHDIAYQEIFSLWAVSPPKLGGLNFTTNDVGNILSISGLALIIYQLTLFPCVEKASGAIGIARISSMLSIPLLQSYPFIALLSGLALHIVLSTASILKNILSITIVTGLFLQQNRVVEQHQRGAANGIAMTGMSLFKAIGPAAGGSVLAWCQKRMDSSFLPGTHMVFLVLNIVEVVGLLMMFKPFFVEKKKPHTDQLQ* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1970 489 CDD MFS_SLC46_TetA_like 45 474 - -
Pvu11g1970 489 PRINTS Tetracycline resistance protein signature 114 138 IPR001958 GO:0022857
Pvu11g1970 489 PRINTS Tetracycline resistance protein signature 171 193 IPR001958 GO:0022857
Pvu11g1970 489 Pfam Major Facilitator Superfamily 46 377 IPR011701 GO:0022857|GO:0055085
Pvu11g1970 489 SUPERFAMILY MFS general substrate transporter 42 482 IPR036259 -
Pvu11g1970 489 ProSiteProfiles Major facilitator superfamily (MFS) profile. 41 480 IPR020846 GO:0022857
Pvu11g1970 489 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 1 487 - -
Pvu11g1970 489 PANTHER MAJOR FACILITATOR SUPERFAMILY-RELATED 1 487 - -
Pvu11g1970 489 Gene3D MFS general substrate transporter like domains 40 474 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1970 Pvu-Chr11 46613124 46618521 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1970 11 46613124 46618521 Pvu11g1970 11 46613124 46618521 ECH