Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1965 ATGTCTTCCTTCAAATCTTACGGCAAAGTTGATGAATCAGAGCACGCCATGCTCGAAGTTCGCAGCAAAAGCAGAAAGAGAATCACCATCATAGCCTTGTCCACAATAGTCCTCATAGGAGTTGTGTGTGCTGCAGTGTTTGGAACAGTTGCTCATAACAACAAGAACAGCAACTCGAATGATGCTCCTTCTGTTTCCAGCTCAGTGAAGGCTGTTTGTGATGTGACACTCTACAAGAACTCCTGCTACAGCAGCCTTGGTTCTGTTGCACACTCGGGTCAGCTTCAACCTCAGGACTTGTTCCTGTTGTCTATTAAAGTGGCCTTAGGTGAGGCTTCTAAGGCTCTTGAGTACTTCTCTGAGAAGGGAGGGTTCAGTGGCTTGAATGTTGATGAAAAGACCATGGAAGATTTTAAGAACTGCAAGGATCTTCTGGGTCTTGCGGTTGATCATTTGAATAGCTCTTTGGCTTCTGGGGGGAAGTTTTCCTTGGTTGATGTGTTGGAGGATCTCAGAACTTGGTTGAGTGCTGCAGGCACTTACCAGCAAACTTGCATTGATGGTATTGGAGAGGCAGAAGAATCATTGAAGAGCAGTGTATACAACAATCTGAAAAACTCAACAGAGTTTACCAGTAACAGCCTTGCCATCGTGACATGGCTTGACAAGGCTGCAAGCTCTTTGAAACTAAGGCGCTTGTTGAGTACTTCGCCACACCAAGATGAAGAACCAAAGTGGCTTCATTCTAAAGATCGTAAGATGCTTGAAGCTGATAATTTGAAGAAGAAAGCCGATATTGTTGTAGCAAAAGATGGCAGCGGAAAATATAAAACAATCACTGCTGCACTCAAACATGTCCCTGAAAAGAGTGACAAGAGGACTGTGATCTATGTGAAGAAGGGGATTTACAATGAAAATGTGAGGGTGGAGAAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAACACCACCATTGTTTCTGGAAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCATCAGCAACATTTGCTGTGTTTGGGAAGAATTTCATAGCTAGGGACATGGGATTTCGCAACACAGCTGGTCCACAGAAGCACCAGGCAGTGGCACTGATGACCAGTGCTGATCAAGCAGTTTTCTATAGGTGTCAAATTGATGCATTTCAGGACAGTCTCTACGCTCATTCAAACCGCCAATTCTACAGGGAATGCAACATTTATGGCACTGTTGATTTCATTTTTGGTAATTCAGCAGTTGTGCTCCAAAACTGCAACATTTTGCCAAAGGTGCCTATGAAGG 1309 0.44 MSSFKSYGKVDESEHAMLEVRSKSRKRITIIALSTIVLIGVVCAAVFGTVAHNNKNSNSNDAPSVSSSVKAVCDVTLYKNSCYSSLGSVAHSGQLQPQDLFLLSIKVALGEASKALEYFSEKGGFSGLNVDEKTMEDFKNCKDLLGLAVDHLNSSLASGGKFSLVDVLEDLRTWLSAAGTYQQTCIDGIGEAEESLKSSVYNNLKNSTEFTSNSLAIVTWLDKAASSLKLRRLLSTSPHQDEEPKWLHSKDRKMLEADNLKKKADIVVAKDGSGKYKTITAALKHVPEKSDKRTVIYVKKGIYNENVRVEKTKWNVMIIGDGMNTTIVSGSLNFVDGTPTFSSATFAVFGKNFIARDMGFRNTAGPQKHQAVALMTSADQAVFYRCQIDAFQDSLYAHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNILPKVPMK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1965 436 TIGRFAM PME_inhib: pectinesterase inhibitor domain 46 221 IPR006501 GO:0004857
Pvu11g1965 436 Pfam Pectinesterase 265 436 IPR000070 GO:0030599|GO:0042545
Pvu11g1965 436 SMART PMEI_2 64 217 IPR006501 GO:0004857
Pvu11g1965 436 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 221 IPR035513 -
Pvu11g1965 436 SUPERFAMILY Pectin lyase-like 263 432 IPR011050 -
Pvu11g1965 436 ProSitePatterns Pectinesterase signature 1. 290 309 IPR018040 -
Pvu11g1965 436 Gene3D - 220 436 IPR012334 -
Pvu11g1965 436 PANTHER PECTINESTERASE 5 435 - -
Pvu11g1965 436 Pfam Plant invertase/pectin methylesterase inhibitor 68 217 IPR006501 GO:0004857
Pvu11g1965 436 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 219 IPR035513 -
Pvu11g1965 436 PANTHER PECTINESTERASE 5 435 - -
Pvu11g1965 436 CDD PMEI-like_3 71 223 - -
Pvu11g1965 436 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1965 Pvu-Chr11 46579156 46581741 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1965 1 436 Carbohydrate Esterase AT3G10710 55.556 8.05e-171 489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0129 5 1022742 1025226 Pvu11g1965 11 46579156 46581741 PCT