Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1963 ATGTCATCCTCACCAATGTCCTTTCTCTTCCTCTTTTTCCTCTCCCTCTTTGTTCCATTACTCTTAGCTCAAACTCCATCACCTTCTCCAATACATACCCCTTCTCCACAACAGTCTCCAACACATGCTCCTTCTCCATCACCATCTCCATCTCATGCTCCTTCTCCTTCTCCATCATCATCTCCATCTCATGCTCCTTCTCCTTCTCCATCACCATCTCCAACTCATGCTCCTCCTCCACCTCTTCCACCTACTTCACCCTCTTCAGCATGCAAGGCCACACTATATCCAAAACTATGCCGTTCCATTCTCTCGTCCATTCAATCCTCACCTTCTGATCCTTACAAATTTGGCAAATTCTCAGTCAAACAAAGCCTAAAACAAGCCAAAAGACTGGCCAAAGCCTTCACTGATTTCCTCAAAAAGAAGAAATCTTCTTCTCTGAGCAGTGCAGAGATTGCAGCCCTAGAAGACTGCAGTGAGCTGAGCCAGCTGAGTGTTGGGTACTTGGAGTCAGTTTCAGAAGAGCTGAAATCTGCAGACCCCTCCAACACAGAGTTGGTTGATAAGATTGAAACGTATCTCAGTGCTGTGGCCACTAACCAGTACACTTGCTATGATGAGTTGGTGGTGATCAAGAGCAACATTGTCAATGCTCTTGCTGTGCCTCTCAACAATGTCACACAACTCTACAGTGTGTCACTTGGGTTGGTCGCGCAGGCTCTGAAGAAGAATCTCAAGAAGCATAAGACCCGCAAACATGGTCTTCCCACCCAGAATTTCAAGGTCAGACAGCCATTGAAAAAGCTCATTAAGCTTCTTCACACAAAGTACAGTTGCACAGCATCATCCAATTGCAGCACAAGAAGTGAAAGGATTCTTAAAGAAACTGAGAGCAAAGGGATTCTACTTAAAGAGTTTGTGATTGTGAGCCTTAGTGGCACAGACAACTTCACCTCCATTGGAGAAGCTATTGCTGCTGCACCAGATAATTTAAGGCCAGAAGATGGCTATTTCCTTATCTATGCAAAAGAAGGATCTTATGAGGAATATGTCACTGTTCCCTTTCAAAAGAAGAATATCTTGCTTATTGGTGATGGTATCAACAAGACTTGCATCACAGGAAACCATAGTGTGGTAGATGGTTGGACCACTTTCAATTCTTCAACCTTTGCCGTCTCTGGAGAAAGATTCGTTGCTGTGGATGTTACATTCAGAAACACTGCTGGCCCTGAGAAGCACCAAGCAGTGGCTCTGAGGAACAATGCAGACCTCTCTACATTCTACCATTGCAGTTTTGAAGGGTATCAAGACACTCTCTATGTCCACTCTCTCAGGCAGTTCTATAGGGAATGTGACATTTATGGCACTGTGGATTTCATTTTTGGAAATGCTGCAGTGGTGTTCCAGAGCTGTAACATCTATGCCAGAAAACCATTGCCAAACCAGAAGAATGCTGTCACAGCACAAGGCAGAACTGACCCCAATCAAAGCACTGGAATTTCAATACAGAATTGCAGGATTGAAGCTGCACCTGACTTGGCTGCAGACTTGAAATCAACTAAGAGTTACTTGGGAAGGCCATGGAAACTGTACTCAAGAACAGTATACATGCAGTCATACATTGGAGAACTAATTCAATCTGTTGGATGGTTAGAGTGGAATGGCACAGATGGATTAGACACCCTCTTTTATGGTGAGTTCAATAACTTTGGACCTGGTTCTGATACAAGCAAGAGGGTACAATGGAATGGTTACAATATACTGAGCCCTACACAAGCTTGGAACTTTACTGTGTATAATTTTACCTTGGGGAATACATGGCTTCCAGATACAGATATACCCTACTCTGAAGGACTTTAG 1863 0.4391 MSSSPMSFLFLFFLSLFVPLLLAQTPSPSPIHTPSPQQSPTHAPSPSPSPSHAPSPSPSSSPSHAPSPSPSPSPTHAPPPPLPPTSPSSACKATLYPKLCRSILSSIQSSPSDPYKFGKFSVKQSLKQAKRLAKAFTDFLKKKKSSSLSSAEIAALEDCSELSQLSVGYLESVSEELKSADPSNTELVDKIETYLSAVATNQYTCYDELVVIKSNIVNALAVPLNNVTQLYSVSLGLVAQALKKNLKKHKTRKHGLPTQNFKVRQPLKKLIKLLHTKYSCTASSNCSTRSERILKETESKGILLKEFVIVSLSGTDNFTSIGEAIAAAPDNLRPEDGYFLIYAKEGSYEEYVTVPFQKKNILLIGDGINKTCITGNHSVVDGWTTFNSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYHCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQSCNIYARKPLPNQKNAVTAQGRTDPNQSTGISIQNCRIEAAPDLAADLKSTKSYLGRPWKLYSRTVYMQSYIGELIQSVGWLEWNGTDGLDTLFYGEFNNFGPGSDTSKRVQWNGYNILSPTQAWNFTVYNFTLGNTWLPDTDIPYSEGL* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1963 620 SUPERFAMILY Pectin lyase-like 305 619 IPR011050 -
Pvu11g1963 620 ProSitePatterns Pectinesterase signature 2. 454 463 IPR033131 -
Pvu11g1963 620 MobiDBLite consensus disorder prediction 27 89 - -
Pvu11g1963 620 Pfam Pectinesterase 308 605 IPR000070 GO:0030599|GO:0042545
Pvu11g1963 620 CDD PMEI-like_3 91 239 - -
Pvu11g1963 620 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 89 239 IPR035513 -
Pvu11g1963 620 Gene3D Invertase/pectin methylesterase inhibitor family protein 87 241 IPR035513 -
Pvu11g1963 620 TIGRFAM PME_inhib: pectinesterase inhibitor domain 89 240 IPR006501 GO:0004857
Pvu11g1963 620 PANTHER PECTINESTERASE 81 619 - -
Pvu11g1963 620 SMART PMEI_2 82 237 IPR006501 GO:0004857
Pvu11g1963 620 Gene3D - 303 620 IPR012334 -
Pvu11g1963 620 MobiDBLite consensus disorder prediction 29 87 - -
Pvu11g1963 620 Pfam Plant invertase/pectin methylesterase inhibitor 88 236 IPR006501 GO:0004857
Pvu11g1963 620 PANTHER PECTINESTERASE 81 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1963 Pvu-Chr11 46573408 46578971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1963 7 620 Carbohydrate Esterase AT3G10720 58.320 0.0 717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0128 5 1017804 1022182 Pvu11g1963 11 46573408 46578971 PCT