Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1948 ATGAAGAGGTCTCCAGCATCTTCTTGTTCATCATCTTCTTCCTCTGTTGGGTTTGAAGCTCCCATTTCTCAGCAAGGCAAAAGAAGGCCTAGCTATTCAAGGAGGAACTTGAAGTCACAGAAATGCAAGCAGAGCCAAACCACTGCCAGAAGAAGCTCTATCTACAGAGGAGTCACAAGGCATAGGTGGACAGGTAGGTTTGAATCTCACCTATGGGATAAGAGTTCTTGGAACAACATTCAGAGCAAAAAGGGTAGACAAGTTTATTTGGGAGCATACGATTCTGAGGAAGCTGCAGCCCGTACCTATGATCTTGCAGCCCTGAAGTACTGGGGAAAGGATGCAGTTCTGAATTTTCCGATTGGAAATTATGCAAAGGATATTGAGGAAATGGACAAAGTTTCAAAAGAAGAATATTTAGCTTCTTTGCGGCGCCAAAGCAGTGGTTTTTCTAGAGGCATTTCTAAGTATCGAGGGGTTGCTAGGCATCATCATAATGGGCGTTGGGAAGCACGCATTGGAAGAGTGTGTGGAAACAAGTACCTTTACTTGGGAACATATAAAACTCAAGAGGAGGCAGCTGTGGCATATGATTTAGCAGCAATAGAGTACAGAGGATTGAATGCAGTGACCAATTTTGACATAAGCAACTACATTGACAAAAAGAAAAAGGACCAAACTCATCAAACAGAAACAGTTCCTCCTAACTCCTCAGACTCTGAAGAAGCAGAAGTAGAAGAACAGAAAACTACACCACCCCCTTTTGAAAATCTGCACATGCCACCACTGCAACACCAAGTTCAACACACACCCCTTGTCTATCATAGGGAAGAATCATCATCATTGGTCACTATTATGGACCATGTGCTTGAACAGGATCTGCCATGGAGCTTCATGTATACTGGGGTGTCTCAGTTTCAAGATCCAGACTTTGCCTTCAGCAAAGCTGATGATTTAGTAGGCATGTTTGATGGGTCAGGATTTGAGGAAGACATTGATTTTCTGTTTAGCACAGAGGATGGTGAGAATGAGAGTGGTATCAACATGAGTGGAGTTTTGGATAGTAATGAAAGTGGAGACACAAATGGGGCTGGTGGAAACATGGTGCATGGGGATAAGAAGCAGAAGGAGATACTATCATTTGCATCTTCTTCTCCATCATCTACAACAACTGCAGATTCTTGTACCTATGCTTAG 1197 0.4302 MKRSPASSCSSSSSSVGFEAPISQQGKRRPSYSRRNLKSQKCKQSQTTARRSSIYRGVTRHRWTGRFESHLWDKSSWNNIQSKKGRQVYLGAYDSEEAAARTYDLAALKYWGKDAVLNFPIGNYAKDIEEMDKVSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDLAAIEYRGLNAVTNFDISNYIDKKKKDQTHQTETVPPNSSDSEEAEVEEQKTTPPPFENLHMPPLQHQVQHTPLVYHREESSSLVTIMDHVLEQDLPWSFMYTGVSQFQDPDFAFSKADDLVGMFDGSGFEEDIDFLFSTEDGENESGINMSGVLDSNESGDTNGAGGNMVHGDKKQKEILSFASSSPSSTTTADSCTYA* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1948 398 CDD AP2 155 216 IPR001471 GO:0003700|GO:0006355
Pvu11g1948 398 MobiDBLite consensus disorder prediction 1 30 - -
Pvu11g1948 398 MobiDBLite consensus disorder prediction 379 398 - -
Pvu11g1948 398 MobiDBLite consensus disorder prediction 37 51 - -
Pvu11g1948 398 CDD AP2 53 121 IPR001471 GO:0003700|GO:0006355
Pvu11g1948 398 MobiDBLite consensus disorder prediction 222 260 - -
Pvu11g1948 398 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 339 - -
Pvu11g1948 398 SUPERFAMILY DNA-binding domain 53 121 IPR016177 GO:0003677
Pvu11g1948 398 MobiDBLite consensus disorder prediction 1 51 - -
Pvu11g1948 398 ProSiteProfiles AP2/ERF domain profile. 54 120 IPR001471 GO:0003700|GO:0006355
Pvu11g1948 398 Gene3D AP2/ERF domain 155 216 IPR036955 GO:0003700|GO:0006355
Pvu11g1948 398 Gene3D AP2/ERF domain 54 122 IPR036955 GO:0003700|GO:0006355
Pvu11g1948 398 SUPERFAMILY DNA-binding domain 155 216 IPR016177 GO:0003677
Pvu11g1948 398 ProSiteProfiles AP2/ERF domain profile. 156 214 IPR001471 GO:0003700|GO:0006355
Pvu11g1948 398 SMART rav1_2 156 220 IPR001471 GO:0003700|GO:0006355
Pvu11g1948 398 SMART rav1_2 54 126 IPR001471 GO:0003700|GO:0006355
Pvu11g1948 398 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 339 - -
Pvu11g1948 398 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Pvu11g1948 398 PRINTS Ethylene responsive element binding protein signature 196 216 IPR001471 GO:0003700|GO:0006355
Pvu11g1948 398 Pfam AP2 domain 54 112 IPR001471 GO:0003700|GO:0006355
Pvu11g1948 398 Pfam AP2 domain 155 206 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1948 Pvu-Chr11 46403162 46408304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1948 43 275 AP2-EREBP Transcription Factor Family AT5G57390 56.652 1.02e-85 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Pvu11g1948 AP2 6e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1948 11 46403162 46408304 Pvu11g1948 11 46403162 46408304 ECH