Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1946 ATGGACTTTGAGGCAGTAGATGAAGGGGAAAACAGTGATAGACCTGCTTCTGAAAATGTTGAAACTGAAAAAGATGAGGAACAAAATATGAAAGTAAACTTGGCTGAAACAGAAGTAAATAACCAGGATGGTGATGCTCATAGGAAACCACTTGTGGGCATGCTGTTTGAATCTGAAGATGCTGCAAAATCATTTTATGATGCATATTCAAGAGATGTAGGATTTAGCACACATGTTGGTCAATTCAGTCGTGCTAAGCCTGATGGTCCAATTATAACTTGGGACTTTGCTTGTTCCAGAGAGGTATTTAAAAGGAAGAATATAGTAAGTTGCAATGCAATGCTTAGGGTAGAGAGAAAAGATGCAAACTGGGTAGTGACAAAATTTGTTGAGGACCATAACCATTCCCTTGCTTCATCTAGAAAGGTGCAGAACCGTCAACCCAGTAAACATTCTGTAGGTGCTGCAAGGAATGTTACAGCAACATTTGATGCCCGTAATGAATCCTGTGCTTCCTTGAATGGAAATAATTTAGAGCCCCCCATTAGTTCAGTTAGGAACTCCTCTCCAGCAGAAAAATGCCATCCAATGAGAAGTATCGGGTCCCTTAGCTATGGAAGATCTTCTCAAAAGAGGACCCTTGGAAGAGATGCTCAAAATCTTCTGAATTATTTTAAGAAGATGCAGGGAGAAAACCCTGGCTTCTATTATGCAATACAACTAGATGATGAAAACCGCATGACCAATGTATTCTGGGCTGATGCAAGGTCAAGAACAGCTTATAATTACTTTGGTGATGCTGTAATATTTGACACAATGTATAGACCAAATCAATACCAAATTCCATTTGCTCCATTTACAGGATTCAATCACCATGGCCAGATGGTTTTATTTGGTTGTTCATTACTTCTAGACGAATCTGAGTCTTCCTTTACATGGCTATTCAAGACGTGGCTATCTGCTATGAATGATAGACCACCTGTTTCCATAACCACTGACCAAGATAGAGCCATACAAGCAGCAGTTGCTCATGTGTTTCCAGAAACTCGCCACTGTATTTGTAAGTGGCATATTTTAAGAGAAGGTCAAGAAAGATTGGCTCATATTTACCTTGCTCATCCTTCATTCTATGGGGATCTATATGGCTGTATCAATTTTTCTGAGACTACTGAGGATTTTGAATCAACATGGAAGTCTCTTCTGGATAAATATGATCTCCAGAAAAATGATTGGCTTCAAGCAGTCTATAATGCTCGTAAACAATGGGCCCCTGTTTACTTTCGTGATACTTTCTTTGCTGTTATTACTTCGAACCACGGGGTAAACTCCTTTTTTGATGGCTATGTAAATCAACAGACAACCATACCTTTATTCTTTAGGCAGTATGAAATATCTCTTGAACATTCATTGGAAAAAGAAGTAGAAGCAGATTATGAGACTATTTGTAACACGCCTGTATTGAAGACTCCATCACCAATGGAACAACAGGCAGCAAATATGTACACTAACAAGATTTATACGAAGTTTCAGGAGGAACTGGTGGAAACTTTTGCATATACTGCAAATAATGTTGAAAATAATGGTGTGATCAGTAAATACAGAGTTGCAAAATATGAACATGATCACAAGGCATACATGGTCACATTAAATATCTCTGAAATGAAGGCAAATTGCAGCTGTCAGATGTTTGAATACTCTGGCATTCTTTGTCGACATGTATTGACTGTTTTCACAGTAACAAATGTCCTTACCCTTCCATCGCACTACATTTTGAAGCGATGGACAAGGAATGCAAAATCCTGTATTGAAACTGATGAAAAAGTAACAGGTCCACTTGACATTGAAAATCTCACTATACGTTTTAATAGTTTATGTCGAGAAGCTGTTAAGCTTTCTGAAGAAGGGGCAATTGCCGTTGAGACTTATAATGTAGCAATGAATGCTTTGAGAGAGGGTGCTAAAAGGGTAGGTATTGTGAAGAAAACTATTGCAAAAGTCACACCTCCAAATACTCAGGGTAATGGAAGCTGTCAGGAAGACAATAGCAAGAAGAGCCCTTCATCAATTTCGGATGCCATCCCATCACTGTGGCCCTGGCAAGATTCACTGTCACATCACTTGAATCATAATGACCTTGGTCTTCCTGTCACTGATCTGAATCATCCTAGTATGGCTCCTGTTTCTATTCACCAGGATGGTGGCCCTCCAGATAACTCTGTTGTCCTCATGTATTTCAAGTCTATGACTTGGATCATCGAAAATAAGAATTCAAGCCAATCTAGTAAAATTGCAGTTATCAACATGAAGCTGCAAGATTATGGTAAGAGCCCTTTAGGAGAGACAGAAGTGCAATTCAGGGTGACAAGGATCACTTTGGAGCCTATGTTGAGATCAATGACTTACATTAGTCAACAGTTGAATGCACCAGTCAATAGAGTTGCTATCATCAATCTGAGGCTCCAGGATACGAAGACAACTACTGGGCAAACAGAGGTGAAATTCCAAGTTTCTAGAGATACTCTAGGCTCCATGCTGAGATCTATGGCCTACATCCGGGAGCAGCTGTAG 2568 0.3956 MDFEAVDEGENSDRPASENVETEKDEEQNMKVNLAETEVNNQDGDAHRKPLVGMLFESEDAAKSFYDAYSRDVGFSTHVGQFSRAKPDGPIITWDFACSREVFKRKNIVSCNAMLRVERKDANWVVTKFVEDHNHSLASSRKVQNRQPSKHSVGAARNVTATFDARNESCASLNGNNLEPPISSVRNSSPAEKCHPMRSIGSLSYGRSSQKRTLGRDAQNLLNYFKKMQGENPGFYYAIQLDDENRMTNVFWADARSRTAYNYFGDAVIFDTMYRPNQYQIPFAPFTGFNHHGQMVLFGCSLLLDESESSFTWLFKTWLSAMNDRPPVSITTDQDRAIQAAVAHVFPETRHCICKWHILREGQERLAHIYLAHPSFYGDLYGCINFSETTEDFESTWKSLLDKYDLQKNDWLQAVYNARKQWAPVYFRDTFFAVITSNHGVNSFFDGYVNQQTTIPLFFRQYEISLEHSLEKEVEADYETICNTPVLKTPSPMEQQAANMYTNKIYTKFQEELVETFAYTANNVENNGVISKYRVAKYEHDHKAYMVTLNISEMKANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKSCIETDEKVTGPLDIENLTIRFNSLCREAVKLSEEGAIAVETYNVAMNALREGAKRVGIVKKTIAKVTPPNTQGNGSCQEDNSKKSPSSISDAIPSLWPWQDSLSHHLNHNDLGLPVTDLNHPSMAPVSIHQDGGPPDNSVVLMYFKSMTWIIENKNSSQSSKIAVINMKLQDYGKSPLGETEVQFRVTRITLEPMLRSMTYISQQLNAPVNRVAIINLRLQDTKTTTGQTEVKFQVSRDTLGSMLRSMAYIREQL* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1946 855 Coils Coil 614 634 - -
Pvu11g1946 855 MobiDBLite consensus disorder prediction 667 689 - -
Pvu11g1946 855 Pfam FAR1 DNA-binding domain 64 138 IPR004330 -
Pvu11g1946 855 MobiDBLite consensus disorder prediction 1 30 - -
Pvu11g1946 855 MobiDBLite consensus disorder prediction 8 30 - -
Pvu11g1946 855 Pfam MULE transposase domain 268 360 IPR018289 -
Pvu11g1946 855 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 35 799 - -
Pvu11g1946 855 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 35 799 IPR031052 GO:0006355
Pvu11g1946 855 Coils Coil 17 40 - -
Pvu11g1946 855 ProSiteProfiles Zinc finger SWIM-type profile. 545 581 IPR007527 GO:0008270
Pvu11g1946 855 Pfam SWIM zinc finger 547 579 IPR007527 GO:0008270
Pvu11g1946 855 SMART 26again6 556 583 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1946 Pvu-Chr11 46378238 46384320 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pvu11g1946 MULE 7.4e-27 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1946 11 46378238 46384320 Pvu11g1946 11 46378238 46384320 ECH
Pvu5g0126 5 999557 1003953 Pvu11g1946 11 46378238 46384320 PCT