Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1943 ATGGGGTATGAAACCAGAATACTCTCAGATGAGTATGAAGTCTCAGAGGTTCTAGGAAGAGGTGGATTTTCTGTTGTCAGAAAAGGCACAAGAAAATCAAGTAGTGACACCAAAAGCCTTGTAGCCATCAAAACCCTGAGAAGGTCAGGAACTGCCTCAAGCCCCAGCTACCCTTCTGGGTTTCCAAGACCAAAGGGTGGAGAGAAGAGCACAGCAGCTATGATGGGGTTCCCCTCAGGGAGACAAGTCTCAGTCTCAGATGCCTTGCTCACCAATGAGATTCTTGTGATGAGGAGAATAGTGGAAAACGTTTCACCACACCCTAATGTGATTGACCTTTATGATGTGTATGAGGACTCCAATGGAGTGCACCTTGTGTTGGAGCTGTGCTCTGGTGGGGAATTGTTTGATAGGATTGTAGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGGTGTGGTTCGCCAGATAGCTTCAGGATTAGAGGCTATTCATAGAGCTAACATTGTGCACAGGGACTTGAAGCCTGAGAATTGTCTTTTCTTGGATGTGAGGAGGGACTCCCCTCTTAAGATCATGGACTTTGGATTGAGTTCTGTTGAAGAATTCACTGACCCAGTTGTTGGTTTGTTTGGATCCATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGGAAGATAACTACCAAGAGTGACATGTGGTCTCTTGGAGTGATTCTATACATCTTACTCTCTGGGTATCCACCTTTCATTGCTCAGACCAATCGCCAGAAACAACAAATGATAATGAATGGGAATTTCAGTTTCTATGAGAAGACATGGAAGGGCATTACTCAATCAGCAAAACAGCTAATTTCAGATCTTCTGACTATAGATCCTAGCAGGAGACCTAGTGCTCAAGATCTTCTGAGTCATCCATGGGTGGTAGGTGACAAAGCCAAGGATGATGCAATGGACCCTGAGATTGTCTCAAGATTGCAGAGCTTCAACGCAAGACGCAAATTGCGTGCAGCTGCAATTGCTAGTGTTTGGAGCTCCACAATCTTCCTCAGAACCAAAAAGCTGAAATCCTTGGTGGGAACACATGATCTCACAGCAGAGGAAATTGAAAACCTCAGGATAAATTTTAAGAAAATATGTGTGAATGGAGACAATGCCACTCTCTCTGAGTTTGAAGAGGTGCTGAAAGCAATGAATATGCCATCACTGATCCCTCTAGCACCACGAATATTTGACTTGTTTGACAACAACCGTGATGGAACAGTTGACATGAGAGAGATACTTTGTGGCTTTTCCAGCTTCAAAAACTCCAAAGGAGATGATGCTCTCCGTTTGTGCTTCCAGATGTATGACACAGATCGATCAGGGTGCATCACCAAGGAAGAAGTAGCATCCATGCTCAGAGCTTTACCAGAAGAGTGTCTACCTGCTGATATCACTGAACCTGGGAAACTGGATGAGATATTTGACAGAATGGATGCCAACAGTGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCCATGCAGAGAGATAGCTCTTTGCAAGACCTTCTTCTCTCTTCTCTAAGACCACAATCTTAA 1584 0.4413 MGYETRILSDEYEVSEVLGRGGFSVVRKGTRKSSSDTKSLVAIKTLRRSGTASSPSYPSGFPRPKGGEKSTAAMMGFPSGRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAGVVRQIASGLEAIHRANIVHRDLKPENCLFLDVRRDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQTNRQKQQMIMNGNFSFYEKTWKGITQSAKQLISDLLTIDPSRRPSAQDLLSHPWVVGDKAKDDAMDPEIVSRLQSFNARRKLRAAAIASVWSSTIFLRTKKLKSLVGTHDLTAEEIENLRINFKKICVNGDNATLSEFEEVLKAMNMPSLIPLAPRIFDLFDNNRDGTVDMREILCGFSSFKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLRALPEECLPADITEPGKLDEIFDRMDANSDGKVTFDEFKAAMQRDSSLQDLLLSSLRPQS* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1943 527 ProSiteProfiles Protein kinase domain profile. 12 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1943 527 Pfam EF-hand domain pair 441 510 IPR002048 GO:0005509
Pvu11g1943 527 Pfam Protein kinase domain 90 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1943 527 Gene3D Phosphorylase Kinase; domain 1 6 63 - -
Pvu11g1943 527 CDD EFh 409 468 IPR002048 GO:0005509
Pvu11g1943 527 Pfam EF hand 411 426 IPR002048 GO:0005509
Pvu11g1943 527 MobiDBLite consensus disorder prediction 50 70 - -
Pvu11g1943 527 SUPERFAMILY Protein kinase-like (PK-like) 4 325 IPR011009 -
Pvu11g1943 527 PANTHER SERINE/THREONINE-PROTEIN KINASE 15 510 - -
Pvu11g1943 527 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 15 510 - -
Pvu11g1943 527 CDD STKc_CAMK 12 307 - -
Pvu11g1943 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Pvu11g1943 527 SMART serkin_6 12 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1943 527 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Pvu11g1943 527 PRINTS Recoverin family signature 364 383 - -
Pvu11g1943 527 PRINTS Recoverin family signature 410 431 - -
Pvu11g1943 527 PRINTS Recoverin family signature 434 453 - -
Pvu11g1943 527 PRINTS Recoverin family signature 500 520 - -
Pvu11g1943 527 Gene3D - 352 520 - -
Pvu11g1943 527 CDD EFh 443 510 IPR002048 GO:0005509
Pvu11g1943 527 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Pvu11g1943 527 SUPERFAMILY EF-hand 353 518 IPR011992 -
Pvu11g1943 527 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Pvu11g1943 527 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Pvu11g1943 527 Gene3D Phosphorylase Kinase; domain 1 71 135 - -
Pvu11g1943 527 SMART efh_1 406 434 IPR002048 GO:0005509
Pvu11g1943 527 SMART efh_1 442 470 IPR002048 GO:0005509
Pvu11g1943 527 SMART efh_1 484 512 IPR002048 GO:0005509
Pvu11g1943 527 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Pvu11g1943 527 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Pvu11g1943 527 Gene3D Transferase(Phosphotransferase) domain 1 136 351 - -
Pvu11g1943 527 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1943 Pvu-Chr11 46349010 46354111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1943 89 513 EF-hand Containing Proteins AT3G10660 37.529 2.86e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Pvu11g1943 Pkinase 9.9e-56 CL0016