Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1942 ATGGGGACTCAAACCATGGGATCTCAAGGTGGTGGTAAAGACAGTAATGGAAAACAGTCACAAGTCCAGCCTCTGGTGCGGCAAAACTCAATGTATAGTCTCACATTGGATGAGGTTCAGAATCAATTGGGTGATTTAGGGAAGCCACTAAGTAGTATGAACCTTGATGAGCTTCTAAAAAATGTGTGGACTGTGGAGGCAGGCCAGACCGTTGGTATGGAGCATGAGGGCACGCCACAAGCTGGTCAAGCGGCTCTGCAGCGTCAGGCTAGTCTGTCATTGACTGGTGCACTAAGCAAGAAGACTGTGGATGAGGTTTGGAAAGATATCCAACAAAACAAAATCATTGAGGAGAAGAAGTTCCGAGACAGACAGCCTACTTTGGGAGAAATGACATTGGAGGATTTCTTGGTGAAAGCAGGAGTTGTTGCAGAAACATCTAATCGAAAGAATACTGGTCCTGTTGCTGGGATTGATTCAAACATGGTAGTACCACAGTTTCCTTCACAAGGACAGTGGATACAGTATCCACCTGCACAATATCAGCATCCACAGCAAGGTTTGATGCAGATCTATATGCCAGGCCAGGGTATGGCACAACCAATGCACATGGGGCCTGGAGCTTCATTGGATGTTTCGTATGCAGATAGCCAGGTGGTCGCAATGCCATCGCCTCTGATGGGAACAATGTCAGACTCACATACTCCTGGAAGAAAAAGGGGCACTCCTGAGGACATGATGGAGAAGACTGTTGAGAGGAGACAGAAAAGGATGATAAAAAATAGAGAATCTGCTGCCCGTTCAAGAGCAAGGAAACAGGCATACACAAATGAATTGGAGCATAAAGTCTCGCGTCTGGAAGAGGAAAATGAAAGGCTGAGGAAACGACAGGAGATAGAGAAGATGTTGCCAAGCACACCACCTCCTGAACCTAAGTATCAACTTCGCCGAATAGGATCAGCTCCATTCTGA 972 0.466 MGTQTMGSQGGGKDSNGKQSQVQPLVRQNSMYSLTLDEVQNQLGDLGKPLSSMNLDELLKNVWTVEAGQTVGMEHEGTPQAGQAALQRQASLSLTGALSKKTVDEVWKDIQQNKIIEEKKFRDRQPTLGEMTLEDFLVKAGVVAETSNRKNTGPVAGIDSNMVVPQFPSQGQWIQYPPAQYQHPQQGLMQIYMPGQGMAQPMHMGPGASLDVSYADSQVVAMPSPLMGTMSDSHTPGRKRGTPEDMMEKTVERRQKRMIKNRESAARSRARKQAYTNELEHKVSRLEEENERLRKRQEIEKMLPSTPPPEPKYQLRRIGSAPF* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1942 323 Gene3D - 251 304 - -
Pvu11g1942 323 MobiDBLite consensus disorder prediction 224 323 - -
Pvu11g1942 323 CDD bZIP_plant_BZIP46 253 298 - -
Pvu11g1942 323 SUPERFAMILY Leucine zipper domain 253 298 IPR046347 GO:0003700|GO:0006355
Pvu11g1942 323 Coils Coil 269 303 - -
Pvu11g1942 323 MobiDBLite consensus disorder prediction 237 301 - -
Pvu11g1942 323 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 251 296 IPR004827 GO:0003700|GO:0006355
Pvu11g1942 323 SMART brlzneu 249 317 IPR004827 GO:0003700|GO:0006355
Pvu11g1942 323 MobiDBLite consensus disorder prediction 1 26 - -
Pvu11g1942 323 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 19 321 IPR043452 GO:0003700|GO:0045893
Pvu11g1942 323 PANTHER ABSCISIC ACID-INSENSITIVE 5-LIKE PROTEIN 2-RELATED 19 321 - -
Pvu11g1942 323 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 256 271 IPR004827 GO:0003700|GO:0006355
Pvu11g1942 323 Pfam bZIP transcription factor 253 297 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1942 Pvu-Chr11 46338494 46343223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1942 18 323 bZIP Transcription Factor Family AT3G56850 56.913 2.42e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu11g1942 bZIP_1 5.8e-13 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1942 11 46338494 46343223 Pvu11g1942 11 46338494 46343223 ECH
Pvu5g0125 5 993270 996579 Pvu11g1942 11 46338494 46343223 PCT