Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1940 ATGACATTGAAATCCTTTGCTCACCTTCTCTTTATGTTGTTTTTTGTGGCCTTTTCCAACATCCAAATTTGCCTAGGAGACTGTGAGAATCTACAGGATACTTGTCCAGCAGTTCCACCCAATCAGCAGACCATATTCATCAATGGTCTACAATGCAAAAACCCAGTTAATGTAACAGCTCAAGATTTCAGGACCACAAAACTGAGCAATGCTGGCTCTACAGACATTTTTGGTGCATCTATGAAAATTGTGAGTGCTGCTGAGTTTGGTGGTCTGAATACTCTTGGCCTCTCCATTGGAAGAACTGATCTTGATGGGAATGGCCTGGTAAACTTCCACTATCATCCTAGAGCTACTGAGATGATCTTTGTTACCAAAGGTGTGTTGTTAGCTGGATTTGTTGATACCAACAACCAGTATTTCCAGAAGTTGATTAAAGTAGGTGATGTGTTTGTGTTCCCTAAGGCTTTGTTCCACTTCTATCTAAATACCGGTTTTGAAGAAGCCACTATCTTCTCAGTGTACAACAGCCAAAATCCTGGCTTTGTATCCCTTAGTCCTACAACTTTAGACACGACATTGGAATCATTAGACAAGATCAAGAGAAAACTCATCTCACTCTCTGCCTCTGAAGCTCAAGATGTAAACAGTTTCATATCTCCAGAAATGGAAAGCATTTTCAGCTAG 687 0.4061 MTLKSFAHLLFMLFFVAFSNIQICLGDCENLQDTCPAVPPNQQTIFINGLQCKNPVNVTAQDFRTTKLSNAGSTDIFGASMKIVSAAEFGGLNTLGLSIGRTDLDGNGLVNFHYHPRATEMIFVTKGVLLAGFVDTNNQYFQKLIKVGDVFVFPKALFHFYLNTGFEEATIFSVYNSQNPGFVSLSPTTLDTTLESLDKIKRKLISLSASEAQDVNSFISPEMESIFS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1940 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 14 214 - -
Pvu11g1940 228 PRINTS Germin signature 113 133 IPR001929 GO:0030145
Pvu11g1940 228 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Pvu11g1940 228 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Pvu11g1940 228 SUPERFAMILY RmlC-like cupins 38 186 IPR011051 -
Pvu11g1940 228 Gene3D Jelly Rolls 26 219 IPR014710 -
Pvu11g1940 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 214 - -
Pvu11g1940 228 SMART Cupin_1_3 66 191 IPR006045 -
Pvu11g1940 228 CDD cupin_OxOx 27 196 - -
Pvu11g1940 228 Pfam Cupin 78 201 IPR006045 -
Pvu11g1940 228 ProSitePatterns Germin family signature. 108 121 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1940 Pvu-Chr11 46326502 46327188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1940 22 222 Miscellaneous Gene Families AT3G05930 34.975 2.96e-33 117