Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1927 GATGCTCTTTCAAAATCAAACTTTGAGAACTACAGCTCCAGGGCACGTGATTCAATGGCATCTTGGGCACCTGACTGCATAGGGTTTAATCTCATTGAGGCTGTTCTATGCCATATATGTCGGAAGGAACGACCAGGTGCTGTCTTAGTGTTTATGACGGGATGGGAGGATATAAGTTCCTTAAGAGATCAACTTAAAGCACATCCTCTTTTAGGAGATCCCAATAGGATTCTACTTCTAACGTGTCATGGTTCAATGGCAACTTCAGAGCAGAAACTCATATTTGAGAAACCACCTCCAAATATAAGGAAAGTAATACTTGCTACAAATATGGCTGAGGCAAGTATTACAATCAATGACATAGTTTTTGTGGTCGATTGTGGAAAAGCAAAAGAGACAACATATGATGCTTTAAATAACACACCTTGTCTTCTACCTTCTTGGATATCACAAGCATCTGCACGTCAGAGAAGGGGTAGGGCTGGTCGTGTGCAGCCAGGAGAATGCTACCACCTTTACCCCAAATGTGTTTATGAAGCCTTTTCTGAATATCAACTTCCTGAACTACTGAGAACACCTTTGAACTCTCTTTGCTTGCAAATAAAAAGTTTGCAGGTTGAGAGCATAGGAGAGTTCTTATCAGCAGCTTTACAGGCACCAGAGCCACGAACCGTTCAAAATGCTATTGATTTCCTCAAGTTGATTGGTGCACTAGATGAAAAAGAAAATCTTACAAATCTTGGGAGTTTTCTCTCTATACTTCCTGTAGATCCCAAGCTGGGCAAAATGTTAATAATGGGAGCTATATTTCGATGCTTTGATCCTGTTCTTACAGTTGTAGCTGGCCTTAGTGTCAGGGATCCGTTTCTTTTGCCCCAAGACAAGAAGGATTTAGCAGGGACAGCAAAGTCTAGGTTTTCTGCCAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCATATGAAGGATGGAAAGATGCAGAAAGAGAAGGATCATCTTATGAATACTGCTGGAGAAATTTTCTCTCTGCCCAAACTCTTCAGGCTATTCATTCACTTCGGAAGCAGTTTAGCTTCATCTTGAAAGATGCTGGCTTGGTAGATGCTGATACAAGCATGATTAACAAATTGAGTCACAATCAGTCTCTTGTGCGTGCAATCATTTGTTCTGGACTCTTTCCTGGCATAGCATCAGTGGTGCACAGGGAGACATCCATGTCATTTAAAACAATGGATGATGGCCAGGTTTTATTATATGCTAATTCAGTGAATGCACGTTACCAGACCATTCCATACCCATGGTTGGTTTTTGGCGAGAAAGTTAAGGTCAATGCAGTTTTCATCCGTGATTCCACTGGTGTATCTGATTCAATACTTATCCTGTTTGGTGGTGCTCTAAGTAATGGGATACAGGCTGGGCATCTGAAAATGTTAGATGGATATGTTGACTTCTTCATGGATCCTAATTTAGCCGACTGCTATTTGAAGCTTAAGGAAGAGCTCGATAAGCTTATCCAGAAGAAGCTTGAAGATCCTAGCATTGACATTCACAAGGAAGGGAAGTACTTGGTGCTTGCTGTTCAGGAGCTGGTTTCCGGGGATCAATGCGAAGGAAGATTTGTGTTTGGTCGTGAAAGCCAGAAGCCTAGGGCCTCTAATAGGGTCTCTAATGATGAAAATAAATTCACAAAAGATGGGACAAATCCCAAGAGCTTGCTGCAAACACTGTTGATGCGAGCAGGACACTCCCCTCCAAAATACAAAACCAAACATCTCAAGACGAATGAGTTTAGGGCACTGGTGGAGTTTAAGGGAATGCAATTTGTTGGCAAACCAAAGAGAAACAAGCAACTTGCAGAAAGGGATGCTGCTATAGAGGCATTGGCTTGGTTGACTCACACTTCTGACAACAATCAGCATGAAGATGATAAATCTCCTCCCGATGTCACTGATAACATGCTAAAAATCCTAGGGAAGCGTAGAAAATCAAAGCGACGCCATGATTAA 2007 0.419 DALSKSNFENYSSRARDSMASWAPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISSLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPPNIRKVILATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRTVQNAIDFLKLIGALDEKENLTNLGSFLSILPVDPKLGKMLIMGAIFRCFDPVLTVVAGLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSAQTLQAIHSLRKQFSFILKDAGLVDADTSMINKLSHNQSLVRAIICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKMLDGYVDFFMDPNLADCYLKLKEELDKLIQKKLEDPSIDIHKEGKYLVLAVQELVSGDQCEGRFVFGRESQKPRASNRVSNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDKSPPDVTDNMLKILGKRRKSKRRHD* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1927 668 PANTHER ATP-DEPENDENT RNA HELICASE 11 582 - -
Pvu11g1927 668 CDD SF2_C_RHA 19 173 - -
Pvu11g1927 668 Gene3D - 207 308 - -
Pvu11g1927 668 Gene3D - 544 636 - -
Pvu11g1927 668 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 31 205 IPR001650 -
Pvu11g1927 668 MobiDBLite consensus disorder prediction 636 657 - -
Pvu11g1927 668 SMART helicmild6 59 165 IPR001650 -
Pvu11g1927 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 297 IPR027417 -
Pvu11g1927 668 SMART ha2_5 227 318 IPR007502 GO:0004386
Pvu11g1927 668 Pfam Helicase conserved C-terminal domain 34 164 IPR001650 -
Pvu11g1927 668 Pfam Helicase associated domain (HA2) 228 301 IPR007502 GO:0004386
Pvu11g1927 668 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 384 465 IPR011709 -
Pvu11g1927 668 Gene3D - 28 184 IPR027417 -
Pvu11g1927 668 SMART DRBM_3 569 632 IPR014720 -
Pvu11g1927 668 Pfam Double-stranded RNA binding motif 569 631 IPR014720 -
Pvu11g1927 668 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 11 582 - -
Pvu11g1927 668 MobiDBLite consensus disorder prediction 551 565 - -
Pvu11g1927 668 MobiDBLite consensus disorder prediction 547 568 - -
Pvu11g1927 668 SUPERFAMILY dsRNA-binding domain-like 563 643 - -
Pvu11g1927 668 MobiDBLite consensus disorder prediction 633 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1927 Pvu-Chr11 46199081 46209866 Transposed