Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1913 ATGCAATCAAACATAACAATGAGAATTTGCCAGCCAAATTTAGAAACAAAGGAGACCCCAGAATCACACTCCCTGCTTGTTCACCTTCCTGGTTATGCAGAAGATGATATAGGTGCTCAATTTGAGTATGATTATAGAAGAGTTAGAGTTTTTGATGGGCGATCACTTGGAGATAACAAATCAATCCGCTTCAACATTGTATATACAGTAGATGATCCTATCCTACTTAGCATGAAGGTAAGCTTCTTCTTCTCCAACTTTCCTCATGACTATGATGAGAGGGACATGTGGAAGATTTTTCAGAGATGGGGGAGGATAAAAGATATCTTTATCTCAAGGAGGTTAAACATCAAGAGACAAAGGTTTGAATTTGTGAGGTTCCATGAGGTGGTAGAGGAAGATGAGCTGGAAAGAAGGTTGAATGCCATTTGGATTGGGACTTGGAAGCTGAGGGTTAATAAATCAAAGTATAGGAAGGTAACAGGGACAACTAAAGAGCGGAACGAAGACCTGAACGGTTTGAAAGCACCACAGCAGAGGCAGGAACGAACGGTATCTCACCGGGCTCACACTCATCCACCGACTGGGTTCAACAACACCCGCACTTATGCACAGGTAGTGACCATGGACCGTCGACAACCGTTCCTTCAGGCGGGGCTGATGGGGAACGAGAAGGCAAAAGGGCACACGGAACTGAACATGGCTCATATCAATGTGGAGAAGGAGGATGTTGAATGGTTGAGGAACAATTTTGATGGAAAACTGTCTGACGCAGGGATGGTGCAGGTGGTAAAGGAGAGTTTCATCATGGAAGGTGTCGACTTCATCCGAGTGAGATATCTAGGAGGCCAGTATGTGCTCTTGTCAGGGGAATCGGACGGGATAATCCAGAAGACGCTCAAAGATAACAAGGAGATGATGGGAGCTCTTTTCGAGTCGATTGTTCCGTGGGAGGAGAGTTTTGCAGTGGATGAAAAGGTGGTGTGGGTTAGATGCAGAGGACTACCTCTTAGCATGTGGAACAGAGGATGCTTTGAACGTGTTGCTGCTCATGTAGGATCCTTGGTGGAGGTAGACGAAGCTATGTCGGAATTTGAAGATTTGGAGTTTGCAAGGCTAAGAGTAAGGGCACCGGTGGGACGAGCCATTCGCATGGCGATGGATATGAAGATCAACGACATTCTCTGCCAGATTGTTTTGGAAGAAGAAATCCCTTTGTTCAACACATGTGGGTGTTGCTCGCATGGCAGAGGGGGAGAGGCAAGAGGAGGCGATTCAGACGAGGGGTCGGAGGAGAAGTTCGGCGAGGAGTTGCTTGAATCGGAGGGTTCCGACGCTGATGTTCAGCAATATGAGAGGAGGAAAGGCGACGAAGAATGCTCAGTGAAATTCCCAGTGGAGGACGCGGTGGGGGAAGAGGGTGGTGCCAGTACAGGTAGCCCTAGTAAGGTCTTGGGGTCTAGGACTGAGAGTAGGTTGCCATTTTTGGAGGAGCACGTAGGCTGCTCGTGGAAAGCGAGTGCAGACAGGGCTCATTCTAAGCATGCGCCAGTGCAGAAGGAGGATGGGACATCTAAGGGGTTGTCAACGGCTAGTAGGAGTGGAAACGTGTTTGACCTAATTGTTAATGGGCCAGCTAAGGCCCAACTACACGAAGGGAGTGAGTTTAGCATCTTTGTGGGTTTGGGCTCGAAACAAATGGAAGTTGAGCAGACAGGAGGGGTGCCGATAGCAAGGAACGCAAAGTCTGGGGTTGACGGCGCGGTGGAGGACTGGGCTAGCGATGCATACGACGAGAAGAGTGACGACAACCCTAGGGATGGTATTAACAGGTCTTTGTCCAGGGTAGAGGCAAGTGGGGAAGATGTCGTTGGCGAAGTGACGATCACGGAGGAAGACGACGGCAGGGGGTCGTATACGCCGAAGATGAGGCGCCCTGAACGACTAAGCGAGCCATCTCAGATCAGCTCACCCATTCAGGCGTATCACATCCGCACCAGGGCTAGAGCGAAGGCGATTGCAACATGCGCAAGGAGTGGAGATGCGACGACGATGGCAAAGAAGGTTGATGACAAAACGAAGATGGTGAAGGTGAGCGGGGGTCGCAAATCTGACACCATTAATGAAGGGAGAGTGCGTCTCAGTTCGGTAGGCGGAAGGAGAGGCACGTTGGAGGACAATTTTTTCAAGCGGATGTTGTGTCCAGTCGGCAGGATACTAGGGTCGTTTCTCAAAGCCTTAGTAACTTGTCAGATGGTGCTGTTAGGAATTGCAACAGGCTGTATTGGATCAACAATGAGTACTCGGAAGCGGTGA 2316 0.4948 MQSNITMRICQPNLETKETPESHSLLVHLPGYAEDDIGAQFEYDYRRVRVFDGRSLGDNKSIRFNIVYTVDDPILLSMKVSFFFSNFPHDYDERDMWKIFQRWGRIKDIFISRRLNIKRQRFEFVRFHEVVEEDELERRLNAIWIGTWKLRVNKSKYRKVTGTTKERNEDLNGLKAPQQRQERTVSHRAHTHPPTGFNNTRTYAQVVTMDRRQPFLQAGLMGNEKAKGHTELNMAHINVEKEDVEWLRNNFDGKLSDAGMVQVVKESFIMEGVDFIRVRYLGGQYVLLSGESDGIIQKTLKDNKEMMGALFESIVPWEESFAVDEKVVWVRCRGLPLSMWNRGCFERVAAHVGSLVEVDEAMSEFEDLEFARLRVRAPVGRAIRMAMDMKINDILCQIVLEEEIPLFNTCGCCSHGRGGEARGGDSDEGSEEKFGEELLESEGSDADVQQYERRKGDEECSVKFPVEDAVGEEGGASTGSPSKVLGSRTESRLPFLEEHVGCSWKASADRAHSKHAPVQKEDGTSKGLSTASRSGNVFDLIVNGPAKAQLHEGSEFSIFVGLGSKQMEVEQTGGVPIARNAKSGVDGAVEDWASDAYDEKSDDNPRDGINRSLSRVEASGEDVVGEVTITEEDDGRGSYTPKMRRPERLSEPSQISSPIQAYHIRTRARAKAIATCARSGDATTMAKKVDDKTKMVKVSGGRKSDTINEGRVRLSSVGGRRGTLEDNFFKRMLCPVGRILGSFLKALVTCQMVLLGIATGCIGSTMSTRKR* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1913 771 Pfam Domain of unknown function (DUF4283) 276 375 IPR025558 -
Pvu11g1913 771 CDD RRM_SF 83 153 - -
Pvu11g1913 771 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 79 487 - -
Pvu11g1913 771 SUPERFAMILY RNA-binding domain, RBD 83 161 IPR035979 GO:0003676
Pvu11g1913 771 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 132 IPR000504 GO:0003723
Pvu11g1913 771 PANTHER RNA RECOGNITION MOTIF 79 487 - -
Pvu11g1913 771 MobiDBLite consensus disorder prediction 436 466 - -
Pvu11g1913 771 MobiDBLite consensus disorder prediction 508 531 - -
Pvu11g1913 771 MobiDBLite consensus disorder prediction 417 487 - -
Pvu11g1913 771 MobiDBLite consensus disorder prediction 595 610 - -
Pvu11g1913 771 MobiDBLite consensus disorder prediction 632 655 - -
Pvu11g1913 771 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
Pvu11g1913 771 Gene3D - 77 173 IPR012677 -
Pvu11g1913 771 MobiDBLite consensus disorder prediction 595 617 - -
Pvu11g1913 771 MobiDBLite consensus disorder prediction 164 199 - -
Pvu11g1913 771 MobiDBLite consensus disorder prediction 632 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1913 Pvu-Chr11 46085144 46091594 Dispersed/Transposed