Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1896 ATGGTGTTCTTATTTCCAACGTTTCAATCCATGAAACTCCTATCATTATGGCTGCTTCTACTTGCAATGGCCAATTCTGTCCATGCAGCAGTGTCTTCCTCACTCTCATCACTTCAACACACTGAAGCAAACGCTCTCTTGAAGTGGAAAGCAAGCCTTGACAACCCAAGTCAGACATTGCTATCTTCATGGCATGGCAACAGTTCATGCAACTGGCATGGAATTTCTTGTGACTACTCAGGATCAGTCTCCAACATTAATCTTACAGACATTGGATTATCTGGTACGCTTCAAACTCTCAATTTTTCAACACTTCCAAACATCCTCACTCTAGATATGAGTCATAACTCCTTGAGTGGAAGCATTCCTCCTCAAATTGGAGTGTTATCCAAACTCACTCATCTTGATCTAAAACACAATCATCTCACTGGATCTATTCCAAAATCTATTGGAAATTTGAGCAGACTGTTAAGTCTAGATTTTTCCTTGAACAACCTTTACGGACTTATTCCCCAAGAAATAGGTAAGTTGCGGAACCTAAATGCTATATATATGAATGAAAACAATTTATCTGGTAATATTCCCGTGGAAATTGGGAAGTTGGTCAACTTGATCAAGTTATGGGTTTTCAATAATAGTCTTTCGGGTTCTATTCCTCAAGAAATTGGAATGATGGCAAACTTGGAAGAACTTGATTTGTCCCATAACTCTTTATCAGGTACAATTCCTTCTACAATTGGAAATTTGAACAAGTTAGTCTATTTGTACATGTATGACAACTATCTATCTGGATCTATTCCTAATGAAGTGGGAAAACTCCATTTTCTTGTGACAATCCAATTGTTAGATAATAATCTTTCTGGGCCAATTCCATCTTCCATCGGTAACTTGGTTAATTCAGAATCTATTCTCCTTAGTGACAACAAACTTTCCGGAATAATTCCTTCGACTATTGGTCACTTGACAAAGCTTACCACACTTGATTTGTCCCTTAACTCTTTGTCAGGTACAATCCCCTCTACAATTGGAAATTTGACAAAGCTCACCATACTTGATTTGTCCCTTAATTCTTTGATAGGTACAATCCCCTCTACAATTGGAAATTTGACAAATCTCACCGAACTTGGTTTATTTTCAAATAAGCTTGGTGGATACATTCCAATAGGAATGAATATGCTACACAGCTGGGAAATTTTGCACTTATATGACAATAATTTCATTGGTCATTTGCCGCACAACATTTGCATAAGTGGAAAGTTGACAAAATTTAGTGCTGGCAGAAACTATTTCACAGGTCCAATACCTAAGAGTTTGAAGAATTGCTCCAATCTCATAAGAGTTTTGCTACAGCAAAACCATTTAACAGGAAACATAACAAAGGATTTGGGTGTATACCCAAACTTGGATTACATAGACCTGAGTGAAAACAACTTTTATGGCCATCTTTCTCCAAATTGGGGAAAATGCCATAATCTCACAAGCCTCAAAATCTCCAACAACAATTTATCAGGTAGCATTCCAACAGAACTAAGTCAAGCTACCAATTTACACGTACTTCAATTGTCTTCAAATCACCTCACAGGAAACATTCCTGAAGATTTAGGTAATTTGACCTACTTGATCAAACTTTCTCTCAATATGAATAATCTTTCAGGAAATGTTCCTATCCAAATAGCATCATTGCAAAGTCTTGACACCTTAGAGCTCGGAGCAAATAACTTTTCTGGCTTAATTCCAAATCAACTTGGAAATTTGGTCAATTTATTAAATTTGAATTTGAGCCAAAATAAATTTATGGGAAATATTCCATCCGAGTTTGGTAAATTAAAATATCTTCGAAGTCTTGATTTGAGCATGAACATTTTGAGTGGAAAAATACCACCAATGTTGGGAGAGTTGAGAAGCTTAGAAATATTAAATCTCTCACACAATCATCTTTCAGGCGATCTCTCTAGCCTTGATGAGATGATAAGCTTGACATCTATTGATATATCATACAACCAATTACAGGGTCCACTTCCAGACATTTCAGGCTTCCGTACGGCTACCATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGTAATGTCTCGGGCTTGAAACCATGCCCAACATCACGTGACAAATCTCAAGATCAGAAGATTAACAGTGTCATATTGGTACTTTTACCCACTGGTTTGGGCATTTTCATGCTAGCATTATTTGTCTTTGGAGTCTCATATCATCTTTGTAGAAGGTCAAAGACAAAAGAACATCCGGATATAGAATCATCAAGCCAAAATCTTTTTGCGATATGGAGTTTTGATGGAAAGATGGTGTATGAGAACATAATTGAAGCCACAGAAGAGTTTGACACTAAACATCTCATTGGAGTTGGAGGACAAGGAAGTGTTTACAAAGCTGAATTGCAAACAAATCAAATTGTAGCTGTTAAGAAATTCCATTCAGTACAAAATGGAGAAATGTCCAATGTTAAAGCTTTCAAAAGTGAAATTCAAGCTTTGACAGAGATTCGACATCGTAACATTGTGAGGCTATATGGATTTTGTTCTCATTCCCGATTCTCATTTTTGGTGTATGAGTTCTTGGAAAAGGGGAGCATAGATAATATTTTAAAAGACGATGAACAGGCAATTGCATTTAATTGGAATAGGAGGGTTGATGCCATTAAAGGTGTAGCAAATGCTTTATGCTATATGCATCATGATTGTTCACCCCGAATCGTTCATCGAGATATATCAAGCAAGAATGTTCTTTTGAATTTGGAGTATGTGGCTCATGTCTCAGATTTTGGAACAGCCAAGCTTCTTAATCCTAATTCAACCAATTGGACCTCATTTGTAGGAACTTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGATGTGAATGAAAAATGTGATGTGTACAGCTTTGGGGTATTGGCACTAGAAATACTTTTTGGAGAGCACCCTGGAGATTATGTAACTTTGTTATTGTCTGCTTCCAATGCCATGGATTCAATACTTGATATTCCTTCCTTGATGGGTAAGTTAGATCAACGTCTCCCGTACCCTACAAAAATTGCTAAGGAGATAACTTTGATTGTAAAGATAGCAAATGCTTGTTTGACTGAAAGTCCTAATTCTCGTCCTACCATGGAGCAAGTTGTCAACTACTTTTCAATGTAA 3174 0.3689 MVFLFPTFQSMKLLSLWLLLLAMANSVHAAVSSSLSSLQHTEANALLKWKASLDNPSQTLLSSWHGNSSCNWHGISCDYSGSVSNINLTDIGLSGTLQTLNFSTLPNILTLDMSHNSLSGSIPPQIGVLSKLTHLDLKHNHLTGSIPKSIGNLSRLLSLDFSLNNLYGLIPQEIGKLRNLNAIYMNENNLSGNIPVEIGKLVNLIKLWVFNNSLSGSIPQEIGMMANLEELDLSHNSLSGTIPSTIGNLNKLVYLYMYDNYLSGSIPNEVGKLHFLVTIQLLDNNLSGPIPSSIGNLVNSESILLSDNKLSGIIPSTIGHLTKLTTLDLSLNSLSGTIPSTIGNLTKLTILDLSLNSLIGTIPSTIGNLTNLTELGLFSNKLGGYIPIGMNMLHSWEILHLYDNNFIGHLPHNICISGKLTKFSAGRNYFTGPIPKSLKNCSNLIRVLLQQNHLTGNITKDLGVYPNLDYIDLSENNFYGHLSPNWGKCHNLTSLKISNNNLSGSIPTELSQATNLHVLQLSSNHLTGNIPEDLGNLTYLIKLSLNMNNLSGNVPIQIASLQSLDTLELGANNFSGLIPNQLGNLVNLLNLNLSQNKFMGNIPSEFGKLKYLRSLDLSMNILSGKIPPMLGELRSLEILNLSHNHLSGDLSSLDEMISLTSIDISYNQLQGPLPDISGFRTATIEALRNNKGLCGNVSGLKPCPTSRDKSQDQKINSVILVLLPTGLGIFMLALFVFGVSYHLCRRSKTKEHPDIESSSQNLFAIWSFDGKMVYENIIEATEEFDTKHLIGVGGQGSVYKAELQTNQIVAVKKFHSVQNGEMSNVKAFKSEIQALTEIRHRNIVRLYGFCSHSRFSFLVYEFLEKGSIDNILKDDEQAIAFNWNRRVDAIKGVANALCYMHHDCSPRIVHRDISSKNVLLNLEYVAHVSDFGTAKLLNPNSTNWTSFVGTFGYAAPELAYTMDVNEKCDVYSFGVLALEILFGEHPGDYVTLLLSASNAMDSILDIPSLMGKLDQRLPYPTKIAKEITLIVKIANACLTESPNSRPTMEQVVNYFSM* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1896 1057 ProSiteProfiles Leucine-rich repeat profile. 227 249 IPR001611 GO:0005515
Pvu11g1896 1057 Gene3D Transferase(Phosphotransferase) domain 1 863 1057 - -
Pvu11g1896 1057 SMART LRR_sd22_2 225 251 - -
Pvu11g1896 1057 SMART LRR_sd22_2 321 336 - -
Pvu11g1896 1057 SMART LRR_sd22_2 345 371 - -
Pvu11g1896 1057 SMART LRR_sd22_2 129 155 - -
Pvu11g1896 1057 ProSiteProfiles Leucine-rich repeat profile. 635 657 IPR001611 GO:0005515
Pvu11g1896 1057 SUPERFAMILY L domain-like 68 411 - -
Pvu11g1896 1057 Gene3D Phosphorylase Kinase; domain 1 743 862 - -
Pvu11g1896 1057 Pfam Leucine Rich Repeat 227 249 IPR001611 GO:0005515
Pvu11g1896 1057 Gene3D Ribonuclease Inhibitor 39 194 IPR032675 -
Pvu11g1896 1057 Gene3D Ribonuclease Inhibitor 195 291 IPR032675 -
Pvu11g1896 1057 Gene3D Ribonuclease Inhibitor 292 391 IPR032675 -
Pvu11g1896 1057 Pfam Leucine rich repeat 466 526 IPR001611 GO:0005515
Pvu11g1896 1057 Pfam Leucine rich repeat 131 190 IPR001611 GO:0005515
Pvu11g1896 1057 Pfam Leucine rich repeat 323 382 IPR001611 GO:0005515
Pvu11g1896 1057 Gene3D Ribonuclease Inhibitor 392 706 IPR032675 -
Pvu11g1896 1057 SUPERFAMILY L domain-like 440 695 - -
Pvu11g1896 1057 Pfam Leucine rich repeat N-terminal domain 41 78 IPR013210 -
Pvu11g1896 1057 PRINTS Leucine-rich repeat signature 228 241 - -
Pvu11g1896 1057 PRINTS Leucine-rich repeat signature 633 646 - -
Pvu11g1896 1057 Pfam Protein kinase domain 785 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1896 1057 ProSiteProfiles Protein kinase domain profile. 784 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1896 1057 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 138 285 - -
Pvu11g1896 1057 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 12 164 - -
Pvu11g1896 1057 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 264 1057 - -
Pvu11g1896 1057 SUPERFAMILY Protein kinase-like (PK-like) 765 1054 IPR011009 -
Pvu11g1896 1057 ProSitePatterns Tyrosine protein kinases specific active-site signature. 908 920 IPR008266 GO:0004672|GO:0006468
Pvu11g1896 1057 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 12 164 - -
Pvu11g1896 1057 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 138 285 - -
Pvu11g1896 1057 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 264 1057 - -
Pvu11g1896 1057 SMART LRR_typ_2 345 369 IPR003591 -
Pvu11g1896 1057 SMART LRR_typ_2 514 537 IPR003591 -
Pvu11g1896 1057 SMART LRR_typ_2 321 344 IPR003591 -
Pvu11g1896 1057 SMART LRR_typ_2 225 249 IPR003591 -
Pvu11g1896 1057 SMART LRR_typ_2 129 153 IPR003591 -
Pvu11g1896 1057 SMART LRR_typ_2 177 201 IPR003591 -
Pvu11g1896 1057 SMART LRR_typ_2 633 660 IPR003591 -
Pvu11g1896 1057 SMART LRR_typ_2 585 609 IPR003591 -
Pvu11g1896 1057 SMART LRR_typ_2 105 127 IPR003591 -
Pvu11g1896 1057 SMART LRR_typ_2 561 584 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1896 Pvu-Chr11 45895024 45898348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1896 18 956 Receptor kinase-like Gene Family AT4G08850 44.235 0.0 756
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pvu11g1896 Pkinase 5.2e-49 CL0016