Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1869 ATGAAGGCCATGAACATAATAATAGAAATATTACTAGGTTGTCTTCTCACTAACCAATTTCACCCCTCAGAGAAGACTAGTTCTGCTTCAGCCGCCGTACGCCCTCGGCGGCGCGACGGTTATCCTCCGCTGCTTCAGCCGCCGCACGCCATCGGCGGCGCGACAGTTGTCCTCCGCGAGGAGCTCCTTCCTATCCGCAACTCGAAGAGCCTCCCAAGACGCAGAGCTTCTTTCCTCTCCGTGACCGTGAGAGCAAGATTTTTCGTTGAAGGTGGGCTGGGTTGGGCCAGTCCATTGAGGAGGTGGGCAAAAGTGGGCTGGGTCAAACTGGCTGGGCTGGCCTGTCTTGACAGCCCCATTCGTAACCAGTTGTTCAGAAAGGTTTTTTGTTTAGGCAGGATTTTTCAAGGGGATGTCTGCTTTGGGCAGTTCAATCCATTTCTGCAAAAATTTTCCACTTCTGGCAACTGTGAAAGATTATCATGGGAACGTTCCACCAAAGAAATTCTATTGGGAAAGATTAAGGTTGCTTTGAGGAATTATCAGGTGCATGAAGCATGGGAATCCTTTCAGGATTTTAGAAGACTTTATGGTTACCCTGAGGTTCATCTAGTGAACCAGCTCATTGTTCAATTGTCCTATTCTTCCAATCATGTTTGGATGCGGAAAGTTTGTGATTTGGTGTTGCAGATTGTTAGAGAGAAGTCAGGTTTACTTCATGCTGATACCTTAACCAAACTTGCACTCTCCCTTGCTAGGTTGCAAATGCCATCCCCTGCCTCAGTGATACTTAGGTTGATGCTTGACAAAGGGTGTGTTCCCTCTATGCATTTATTGTCCTTGGTTGTTTTTCATATTGTGAAGACAGAAATTGGAACACATCTTTCATCCAATTATCTGTTTCAAGTTTGTGATCTTTACAATTGCTTGAAAGATAAGAAGGATCACCATGCGGTCACGATCAAGCTGGACACCTTGGTCTTTAATCTTGTTCTTGATGCTTGTGTGAAGTTTAAATTGTCTTTGAAAGGCCTGAGACTGATTGAATTAATGTCGCTGACTGGGACCATGGCTGATGCACACTCGATTGTGATAATTTCACAGATTCTAGAGATGAATGGTCTGAGAGATGAAATGCAGGAATTGAAAGATCATATTGACAGAGTTTCGGCTGCTTATGTTTGTCACTATTGTCAGTTCTATGATAGTTTGCTGAGCTTGCACTTCAAATTTAATGACATTGATGCTGCAGCTAAGCTTGTTCTGGATATGACTAGCTCGCATAATTGTAATGTTAAGAAAGAATATGAGAAACACTTGCTGAATCCTTGCTTTATTGCCATTGGATCTCCTAATCTTAGGACTGCATTGAAGATGCGCATTGAGCCTGAGCTATTGTGTAAGGATTCTGTCCTTAAAGTTGAAAGCAGACAGGTTCTTATCTTTTATAGGGGTGGGAAACTAGTTCTTAGTAATAGAGCTTTGGCTAAGTTCATCAGTGGTTACAAGAGAGATGGGAGGACTGGTGAACTTTCAAAACTTTTACTTAGTATTCAAGGGGAATTATGTTCAGTGGCAGGCTCCAGTTTGTGTTTTGATGTGATCAGTTCTTGTATTCAATTAGGATGGCTTGAGTGTGCTCATGACATTTTGGATGATATAGAGGCTACTGGTTCTCCAATGGGTCAGGATATGTATCTATTACTTGTGTCAGCATACCAGAAGCGGGGAATGAAAAGAGAAGCAAAGGCACTACTGAAACAAATGAAAAAGGTTGGTCTGTTGGACAAAGGGTTATCTGATGATGCGATGGACAAACACAACCTCTGTGAAAAAACATTAAATTCACTTGGTAAAACAGATTTGGCTATTGCCTTAGCTCAAACTTTGAAAGATGAAGAAGATCAGACAGTTTTTCATTTGGTGTATAACTTCAATTCTTCCATTTTCTTTTTCTGCAAGGCCAGAATGATAGAGGATGCATTAAAGGCATATAGAAGAATGGTTAGCATGAAAGTTCAGCCCACAAGTCAAACTTTTGCCTTTTTGATGTGTGGATATTCTTCTCTTGGTATGTATCGTGAGATCACAATCTTGTGGGGAGACATTAAGAGATTCATGAAGAGTGACAATTTAGTGGGAGATAGAGATCTCTATGAGTTACTATTGCTAAACTTTCTTCAAGGTGGTTACTTTGAGAGAGTGATGGAGGTCATTAGCCATATGAGAGACCGTAACATGTATGCTGACAAGTGGATTTACAAAAGTGAGTTCCTTAGACTTCATAAGAATCTTTATAGGAGTTTAAAAGCATCAAATACAACAACAGAAGCACAAAGCAAACGACTTGAGCATGTTCAGGAGTTTAGGAAATGGGTGGGTATTGATTAA 2391 0.4141 MKAMNIIIEILLGCLLTNQFHPSEKTSSASAAVRPRRRDGYPPLLQPPHAIGGATVVLREELLPIRNSKSLPRRRASFLSVTVRARFFVEGGLGWASPLRRWAKVGWVKLAGLACLDSPIRNQLFRKVFCLGRIFQGDVCFGQFNPFLQKFSTSGNCERLSWERSTKEILLGKIKVALRNYQVHEAWESFQDFRRLYGYPEVHLVNQLIVQLSYSSNHVWMRKVCDLVLQIVREKSGLLHADTLTKLALSLARLQMPSPASVILRLMLDKGCVPSMHLLSLVVFHIVKTEIGTHLSSNYLFQVCDLYNCLKDKKDHHAVTIKLDTLVFNLVLDACVKFKLSLKGLRLIELMSLTGTMADAHSIVIISQILEMNGLRDEMQELKDHIDRVSAAYVCHYCQFYDSLLSLHFKFNDIDAAAKLVLDMTSSHNCNVKKEYEKHLLNPCFIAIGSPNLRTALKMRIEPELLCKDSVLKVESRQVLIFYRGGKLVLSNRALAKFISGYKRDGRTGELSKLLLSIQGELCSVAGSSLCFDVISSCIQLGWLECAHDILDDIEATGSPMGQDMYLLLVSAYQKRGMKREAKALLKQMKKVGLLDKGLSDDAMDKHNLCEKTLNSLGKTDLAIALAQTLKDEEDQTVFHLVYNFNSSIFFFCKARMIEDALKAYRRMVSMKVQPTSQTFAFLMCGYSSLGMYREITILWGDIKRFMKSDNLVGDRDLYELLLLNFLQGGYFERVMEVISHMRDRNMYADKWIYKSEFLRLHKNLYRSLKASNTTTEAQSKRLEHVQEFRKWVGID* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1869 796 Gene3D Tetratricopeptide repeat domain 483 601 IPR011990 GO:0005515
Pvu11g1869 796 Gene3D Tetratricopeptide repeat domain 608 795 IPR011990 GO:0005515
Pvu11g1869 796 Gene3D Tetratricopeptide repeat domain 166 439 IPR011990 GO:0005515
Pvu11g1869 796 TIGRFAM PPR: pentatricopeptide repeat domain 652 676 IPR002885 -
Pvu11g1869 796 Coils Coil 372 392 - -
Pvu11g1869 796 PANTHER OS07G0495300 PROTEIN 142 796 - -
Pvu11g1869 796 Pfam PPR repeat 565 593 IPR002885 -
Pvu11g1869 796 Pfam PPR repeat 651 672 IPR002885 -
Pvu11g1869 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 641 675 IPR002885 -
Pvu11g1869 796 PANTHER BNAC05G43320D PROTEIN 142 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1869 Pvu-Chr11 45531903 45535000 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1869 534 754 Glycosyltransferase AT1G05670 23.982 2.20e-07 52.8