Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1866 ATGCCTGCTTATGGGGCATCATTTGACCTAAAGTGGCTTCTTGGGTTGCTTGGTTTGGGAGAAAAGGGAGCACCTATTTCTGATGATAACAGCATCAAGACTTGGCTTCAGATATTGTTACTCACACTTGTGATTGGAATCTTGTGGATTTTGTATGAGCTGACAGATGACAGAGAAAACAATCACAATGTCAATGAGGTTGATGAGTTGGAGGAGATGGATCACCCCACTCATGAGTTGGACCATTTTTATGAGTCTCAGCAGAGAGAGCAGGAGCACCCCAATGGCGAGTTAGACCATCACTTTGATGAGGAAGATTCTCACCGGGCCACCGTGTCCGGTGGCAATGATGGGAGGAGACACCGTGGCTGTGCCTTCTGTGGAAATTCCAGCACCACAAGGTGCTCTCGCTGCAAGGCTGTTAGATATTGCTCTGTGAAATGCCAAATTATGCATTGGAGATCAAGGCATAGATATGAATGCTGTGAATCAGAGATTGCAGCAGATGAAGAACAAAGAACTGAGGATGAAACAACCTCAAACCTTGTTGAGAGTTCTGAAATGGAGAGTTCCCATGTTGAAGATGGAGCATTGTGGACTTCAGAATCAGACATGGCAATGGAAGTTTCGAGTAATTTGCATAGTTGTAAAGTATGTGGAAGCCCTAGTACTACAAGATGTCCACGATGCAAAGCCATTCAATACTGCTCAATGAAGTGCTTGATTATGGACTGGAAATGGCATAAAGTGGACTGCATTGCAAGGGTGGATTTAACTCCAAAAGAAAGACCCAAAGATGTTGGAATGCTCCAGAATTCATATGAAGAGGAAGATAATGTTAAATCATCTGGTCCCCTTTCTTTAGAGTGTCATCCAGGAAGCACAAGCCTCAAGTCTCCAATTGAAGCATCACAGAGTGAATGTGCTGACTTGAAGAAATTACTGCAAGAAGAGCAAAAACGTGTTCAAAATCTTACAATGGAATGTGGCAAGAGTCAAGAGGCTGCAAAAATGGCAATGAAAGAAGTTGAAGCAGTAAGACAGGAGATACAAGAAAAGAGAGAGCATTCCCAACATCTTAAGGAGAATTTTCGAAGAGATCTTATATTTGCTGAATCTAGAGCTACAATTGCTGAGGAAAAGCTAAGTGAGCTTTACAAGAAAATCAGAATGTCAGATTATAAGCTTTGTTCTATATGCCTCTCCAATGACAATGACTTGGCCTTTGGATGTGGACACATGACTTGCAGAGACTGTGGATCAAAATTATCAAGGTGTCCTATATGCAGGGAGCTTATCACAAACCATATCAAGTTGTTTCCTGGTTGA 1329 0.4229 MPAYGASFDLKWLLGLLGLGEKGAPISDDNSIKTWLQILLLTLVIGILWILYELTDDRENNHNVNEVDELEEMDHPTHELDHFYESQQREQEHPNGELDHHFDEEDSHRATVSGGNDGRRHRGCAFCGNSSTTRCSRCKAVRYCSVKCQIMHWRSRHRYECCESEIAADEEQRTEDETTSNLVESSEMESSHVEDGALWTSESDMAMEVSSNLHSCKVCGSPSTTRCPRCKAIQYCSMKCLIMDWKWHKVDCIARVDLTPKERPKDVGMLQNSYEEEDNVKSSGPLSLECHPGSTSLKSPIEASQSECADLKKLLQEEQKRVQNLTMECGKSQEAAKMAMKEVEAVRQEIQEKREHSQHLKENFRRDLIFAESRATIAEEKLSELYKKIRMSDYKLCSICLSNDNDLAFGCGHMTCRDCGSKLSRCPICRELITNHIKLFPG* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1866 442 ProSiteProfiles Zinc finger RING-type profile. 397 430 IPR001841 -
Pvu11g1866 442 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 113 201 - -
Pvu11g1866 442 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 215 358 - -
Pvu11g1866 442 MobiDBLite consensus disorder prediction 170 192 - -
Pvu11g1866 442 SMART ring_2 397 429 IPR001841 -
Pvu11g1866 442 Pfam MYND finger 124 161 IPR002893 -
Pvu11g1866 442 Pfam MYND finger 216 252 IPR002893 -
Pvu11g1866 442 MobiDBLite consensus disorder prediction 85 117 - -
Pvu11g1866 442 SUPERFAMILY HIT/MYND zinc finger-like 213 255 - -
Pvu11g1866 442 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 215 358 - -
Pvu11g1866 442 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 113 201 - -
Pvu11g1866 442 Coils Coil 301 363 - -
Pvu11g1866 442 SUPERFAMILY RING/U-box 385 436 - -
Pvu11g1866 442 Pfam Prokaryotic RING finger family 4 397 436 - -
Pvu11g1866 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 441 IPR013083 -
Pvu11g1866 442 ProSiteProfiles Zinc finger MYND-type profile. 124 161 IPR002893 -
Pvu11g1866 442 SUPERFAMILY HIT/MYND zinc finger-like 120 162 - -
Pvu11g1866 442 ProSiteProfiles Zinc finger MYND-type profile. 216 252 IPR002893 -
Pvu11g1866 442 MobiDBLite consensus disorder prediction 85 116 - -
Pvu11g1866 442 Gene3D - 111 166 - -
Pvu11g1866 442 Gene3D - 199 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1866 Pvu-Chr11 45497161 45505545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1866 110 161 Miscellaneous Gene Families AT4G31670 46.429 4.39e-08 53.5