Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1865 ATGAATGTTCGTGGGGTACACTTGAGTGTAGATTGTGTTCTTATGATCATAGTGTTGCTGATAATATCCTTGCTAGGGTTTCTTTTCTGGCTAGAAAACAAGTTATCCAATCATAGTTCCAGTGAGAACAATGATTTCAAAGAACACATGCAGATCAATGATGATGAAAGAAGCAACTATCCATTCTGTGAACAGGATTCTGCACACTATGCTTGCTCCTTCTGTGGAAGATTAAGCAGCACAGTTACAGCATGTTCACGCTGCAAAACTGCCATATATTGCTCAAACACATGCAATTTTAAGCACTGGGGGCTTGGCCATAAATATGAATGCATTGAGATTGAAGGGTCAGAAGATCAGCAAGAATCACCTTCTCATGGAAGCCATTGTCTTCTCATGGATAAATACTCATCAGATGAAGTTGAGGAGAGAATATATGAAGGAGATGTTTACTATATTGAAGGAGGAGAAAAGAGTGAAGAAAGATCATTGATGTGTGGAAATGGCATTGTGAATGGAAACGAAGGGTGTGCAGTGTGTGGTAATCCAAGCTCCAAAGTATGTTCAAGATGCAAAGCCATAAAATATTGCTCAAGAACATGCCAACATTTCGATTGGAGATCAGGGCATAAGTTTCAATGTCATGTTGAGAAGGAAAATTCAAATCAGGTTGTGAATCCTGAGAATTCATATGAACTGGAAGATAATGTTCATTCATCTAGTCCTCTTTGCTTGGAATTTTACTCAGGAAGCAGCAGTTCCAGGGCCCTGATTCCTACTTCTTTGTCTCAGGAAGAAACCAAGAATAGCAACCAGAAGGAGGTTGAAGAACAATTGAGAAGCCTGAAAGAAGAACTGACAAAGATTAAGGACGAGAACAAATGGCTACAATCAGAGCGTGACGAATGGGAAGTGAGAACTAGGAATTCTATAGATAGACTTTACAGCTTCAGGAAAGAAAATGAACACCAGCTGTTTATTTTGAAGCATGAAAATGAGTTGATGTCAAATGCTGAGAAGAAAGCAACTCAAATGGTTAATAGTTTATCTCAGAGGGTACAGTGCTTGCAGATTGCAGTGGAAAGTGGAGTTGAAGAGAGGCAAAAACAAGAAGAATATATACATATGCTGCAGAATGATTGTGCTAAACTTAAGATAGAGCTACAAGAACAGAAAAAGTGTGTGAAAAGGCTTACATTGGAGCTTGATAAGACTAAACTTCCAGTGAGAGTAACAGAAGACACAAGGCAAAAGTTAGTCAATGCTTCCACTGAATTTGCAGCTGTTGAATCCAATGCTGCAGCTGCTGAGGTGTCCCAGCCAATTAGTTTGAGCAGAAACCCAACCTTTACAAGACAGGGTTGTATGATTTGCCTAGCCAATGAGAAGAACATGGCCTTTGGTTGTGGACACATGACATGTTTTGAGTGTGGATCAAAAATTCGCAAGTGTCATATATGTCGAAGGAAGATTACCAATCGTATCAAGTTGTTTCCTGATTAA 1503 0.3939 MNVRGVHLSVDCVLMIIVLLIISLLGFLFWLENKLSNHSSSENNDFKEHMQINDDERSNYPFCEQDSAHYACSFCGRLSSTVTACSRCKTAIYCSNTCNFKHWGLGHKYECIEIEGSEDQQESPSHGSHCLLMDKYSSDEVEERIYEGDVYYIEGGEKSEERSLMCGNGIVNGNEGCAVCGNPSSKVCSRCKAIKYCSRTCQHFDWRSGHKFQCHVEKENSNQVVNPENSYELEDNVHSSSPLCLEFYSGSSSSRALIPTSLSQEETKNSNQKEVEEQLRSLKEELTKIKDENKWLQSERDEWEVRTRNSIDRLYSFRKENEHQLFILKHENELMSNAEKKATQMVNSLSQRVQCLQIAVESGVEERQKQEEYIHMLQNDCAKLKIELQEQKKCVKRLTLELDKTKLPVRVTEDTRQKLVNASTEFAAVESNAAAAEVSQPISLSRNPTFTRQGCMICLANEKNMAFGCGHMTCFECGSKIRKCHICRRKITNRIKLFPD* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1865 500 SUPERFAMILY HIT/MYND zinc finger-like 69 113 - -
Pvu11g1865 500 Gene3D - 71 117 - -
Pvu11g1865 500 ProSiteProfiles Zinc finger RING-type profile. 455 488 IPR001841 -
Pvu11g1865 500 ProSiteProfiles Zinc finger MYND-type profile. 72 111 IPR002893 -
Pvu11g1865 500 Pfam MYND finger 177 214 IPR002893 -
Pvu11g1865 500 Pfam MYND finger 72 111 IPR002893 -
Pvu11g1865 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 498 IPR013083 -
Pvu11g1865 500 SUPERFAMILY HIT/MYND zinc finger-like 175 218 - -
Pvu11g1865 500 Coils Coil 265 306 - -
Pvu11g1865 500 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 175 399 - -
Pvu11g1865 500 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 63 143 - -
Pvu11g1865 500 Gene3D - 170 220 - -
Pvu11g1865 500 ProSitePatterns Zinc finger MYND-type signature. 177 214 IPR002893 -
Pvu11g1865 500 Coils Coil 367 401 - -
Pvu11g1865 500 Pfam Zinc finger, C3HC4 type (RING finger) 453 492 - -
Pvu11g1865 500 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 175 399 - -
Pvu11g1865 500 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 63 143 - -
Pvu11g1865 500 ProSiteProfiles Zinc finger MYND-type profile. 177 214 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1865 Pvu-Chr11 45479779 45487874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1865 175 214 Miscellaneous Gene Families AT4G31670 60.000 1.65e-09 58.5