Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1863 ATGGAAAGAATGTTCCCTCCTAAGAAGCCTTCAACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGTGACTCAGGGCTTGTCCTCACCACAGACCCTAAGCCACGTCTTCGTTGGACTGTTGAACTGCATGAACGCTTTGTTGATGCTGTTGCTCAGCTTGGAGGACCTGATAAGGCCACTCCTAAGACAATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTAAAGAGCCACCTTCAGAAATTCAGACTTGGAAAGCAGCCCCACAAGGATTTCAATGAACACTCTATTAAGGATGGCATGAGAGCTTCTGCTTTAGAACTTCAGAGAAACATTGGCTCCTCTTCTGCCATGATTGGTCGCAACATGAACGAGATGCAAATGGAAGTGCAGAGAAGACTGCATGAACAATTAGAGGTTCAGAAAAACCTTCAGCTGAGGATTGAGGCTCAAGGAAAGTACATGCAGAGCATATTGGAGAAGGCTTATCACACACTTGCAGGTGAAAACATGGGCACAAGCATGAAGGGTATGGGAGGAGCTCAAGGAAGCAGTGAGATGGGGGTGATGAAAGACTTTTGTCCTATGAACTACCCTTCTTTTCAAGATCTTAACTTGTATGGTGGTGGTGGTGGTGAGCAACTTGAAGGGTTTATGGGATCAAACAATGAGGGTGTGTTTGAGGGAAAGAAGAGGCTTTACCCCTACAGTGGAAGTGGGAAGAGTCCATTGATCTGGTGTGATGATCTCAGGCTTCAAGATCTGGGAACAACTTCATCATGCATTAGCCCTGAAGAGGACCCTTTCAAAGGTGATCATCACCATCATCATCATCACAACAAGGTTCAGATTTCACCACCATCAATGGATAGTGATCCCATGTCAGAGATCTATGACACAAAGCCATTGATGGTACTCCATGGAGAAAGTGTAGGTAATCACAAGAAATTTGATGCTTCTTTGAAGCTAGAAAGGCCATCACCACAAAGATCACCACTTCAACCAGAAAGGAATAATAGTCCTATGATCAATGCTACTTCCATCACACAAGGGTTTTGA 1074 0.4488 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNEHSIKDGMRASALELQRNIGSSSAMIGRNMNEMQMEVQRRLHEQLEVQKNLQLRIEAQGKYMQSILEKAYHTLAGENMGTSMKGMGGAQGSSEMGVMKDFCPMNYPSFQDLNLYGGGGGEQLEGFMGSNNEGVFEGKKRLYPYSGSGKSPLIWCDDLRLQDLGTTSSCISPEEDPFKGDHHHHHHHNKVQISPPSMDSDPMSEIYDTKPLMVLHGESVGNHKKFDASLKLERPSPQRSPLQPERNNSPMINATSITQGF* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1863 357 MobiDBLite consensus disorder prediction 1 20 - -
Pvu11g1863 357 MobiDBLite consensus disorder prediction 325 357 - -
Pvu11g1863 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 308 - -
Pvu11g1863 357 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Pvu11g1863 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Pvu11g1863 357 Pfam MYB-CC type transfactor, LHEQLE motif 131 169 IPR025756 -
Pvu11g1863 357 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Pvu11g1863 357 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Pvu11g1863 357 MobiDBLite consensus disorder prediction 336 357 - -
Pvu11g1863 357 MobiDBLite consensus disorder prediction 268 301 - -
Pvu11g1863 357 Gene3D - 34 92 - -
Pvu11g1863 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 308 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1863 Pvu-Chr11 45455983 45460142 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu11g1863 Myb_DNA-binding 4.9e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1863 11 45455983 45460142 Pvu11g1863 11 45455983 45460142 ECH
Pvu5g0493 5 5428850 5431298 Pvu11g1863 11 45455983 45460142 PCT