Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1853 ATGGAGATGCAGTGGTCAATTGTAGATGATGGTTATATCATTGATTTGATGGATTTGGGTCACCGCAGCAACACCAACAACAACATCAACTCTGAATTTTTAAGATCAACGGAAGATAGTGGTGTTTATATCTTTGATTCTATGAACTTGGGTCACAACAACAACATGCAAAACAATGGCAATAGAACTTTAAGATCAACCCAAGATGGTGTTTTCATCTTTGATTCCATGCAAAACAACCACATTTCTTTTCAAAATCTTGAAAGGTTCAAAATTGAAGAAAAACGAGAAGGGTCTTGTTGCATCTGTCTTGGTGATTTTTCAATTGGTTCGAGAGCAATTCGCATGCCCCAACCATGTTCTCATACCTTTCATCAACATTGCATCACAAAGTGGTTCAACATCAGTCACACATGTCCTTTGTGTCGCAGGAACATCTAG 441 0.381 MEMQWSIVDDGYIIDLMDLGHRSNTNNNINSEFLRSTEDSGVYIFDSMNLGHNNNMQNNGNRTLRSTQDGVFIFDSMQNNHISFQNLERFKIEEKREGSCCICLGDFSIGSRAIRMPQPCSHTFHQHCITKWFNISHTCPLCRRNI* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1853 146 PANTHER GB|AAF27103.1 54 146 - -
Pvu11g1853 146 PANTHER TARGET OF ERK KINASE MPK-1 54 146 - -
Pvu11g1853 146 SUPERFAMILY RING/U-box 90 146 - -
Pvu11g1853 146 SMART ringv_2 99 143 IPR011016 GO:0008270
Pvu11g1853 146 Pfam Ring finger domain 99 143 IPR001841 -
Pvu11g1853 146 ProSiteProfiles Zinc finger RING-type profile. 100 143 IPR001841 -
Pvu11g1853 146 SMART ring_2 100 142 IPR001841 -
Pvu11g1853 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 146 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1853 Pvu-Chr11 45348608 45349048 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1853 85 143 C3H Transcription Factor Family AT1G14200 43.548 5.79e-12 58.5