Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1852 ATGGATTTGGGTCACCGTAGCAACACCGACACTGGATTTTTAAGATCAATTGTAGATGGTGGTGTTTATATCTTTGATTCCATGAACTTGGGTCACAACAACATGCAGAACAATGGTAGTAGAATTTCAAGATCAACCCATGATGGTGTTTTCGTCTTTGATTCCATGCAAAGCAACCATGATTCTTTTAAAAATCTTGAAAGGTTCATAATTGGAGAAAAAACAGAAGAGTGTTGTTCCATCTGTCTTGTAGAATTTTCAATTGGATCAAGAGCAATTCGCATGCCCCAACCATGTTATCATATCTTTCATCAACAGTGCATCACAAAATGGCTCAACATCAATCACACATGCCCTTTGTGTCGGAGAAACATCTAG 378 0.381 MDLGHRSNTDTGFLRSIVDGGVYIFDSMNLGHNNMQNNGSRISRSTHDGVFVFDSMQSNHDSFKNLERFIIGEKTEECCSICLVEFSIGSRAIRMPQPCYHIFHQQCITKWLNINHTCPLCRRNI* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1852 125 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 32 123 - -
Pvu11g1852 125 ProSiteProfiles Zinc finger RING-type profile. 79 122 IPR001841 -
Pvu11g1852 125 SMART ring_2 79 121 IPR001841 -
Pvu11g1852 125 Pfam Ring finger domain 79 122 IPR001841 -
Pvu11g1852 125 SUPERFAMILY RING/U-box 74 125 - -
Pvu11g1852 125 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 32 123 - -
Pvu11g1852 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 125 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1852 Pvu-Chr11 45346707 45347084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1852 43 122 C3H Transcription Factor Family AT1G14200 40.230 2.19e-14 64.3