Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1851 ATGGATTGTTCAGCTGCAAGAAAGACACAAAAGGCAGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTGGGTAACGTTTTAGACCCTGACAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACAATTCATTTGCTGAAGGACCTTACTTCTCATGTTAGTAAACTCAAAGAAGAATATGCTACACTAAATGAAGAATCTCGTGAGTTGACTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCGGATATCGAGAACTTGAATAATCAGTATCAGCAGCAGCTCAGAACTATGTTTCCATGGACTGCAATGGATCATTCAGTTGTGATGGCTCCACCATCATACCCCTTTCCAATGCCAATGGCAGTACCTCCTGGTCCAATTCCCATGCAGCCATTCCCCTACTTTGCTAATCAACATCCTGCAGTCATCTCCAATCCCCATTCAACTTTTGTTCCTTATTTAGCCCCCAATACCATTGTTGAACAACAATCCACACAGTATGTTTCGCCTCCACTTCATCCAGGCAGTCGGTCCAATGTGTCTGAAAAACAAGAGTCCAAAAGCAAATCATTCAGGGAGAGCAAGGCCGAAAAGAATGAGGATTCTAATGATGTCACTACGGACCTTCAGTTGAAGACTCCTGGGTCTTCCGGAGATCAGGATTTATCATCCGGACAAAGAAAATCTGGGAAGTTGTCGAGAAGGGAAAGCAGCTGCTGCTCGGGAGGGAATTCATTAGGTAGGTCTTCTTCTCATAGCGCTCAGGATAGCTCATCAAGCAGTACAGTTGCAAGCAGAAAGCATAATGAATGA 849 0.4346 MDCSAARKTQKADREKLRRDRLNEQFVELGNVLDPDRPKNDKATILGDTIHLLKDLTSHVSKLKEEYATLNEESRELTQEKNDLREEKASLKSDIENLNNQYQQQLRTMFPWTAMDHSVVMAPPSYPFPMPMAVPPGPIPMQPFPYFANQHPAVISNPHSTFVPYLAPNTIVEQQSTQYVSPPLHPGSRSNVSEKQESKSKSFRESKAEKNEDSNDVTTDLQLKTPGSSGDQDLSSGQRKSGKLSRRESSCCSGGNSLGRSSSHSAQDSSSSSTVASRKHNE* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1851 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 76 IPR036638 GO:0046983
Pvu11g1851 282 MobiDBLite consensus disorder prediction 177 282 - -
Pvu11g1851 282 MobiDBLite consensus disorder prediction 177 191 - -
Pvu11g1851 282 Coils Coil 5 25 - -
Pvu11g1851 282 MobiDBLite consensus disorder prediction 192 217 - -
Pvu11g1851 282 Gene3D - 5 85 IPR036638 GO:0046983
Pvu11g1851 282 Coils Coil 53 108 - -
Pvu11g1851 282 MobiDBLite consensus disorder prediction 218 239 - -
Pvu11g1851 282 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Pvu11g1851 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Pvu11g1851 282 PANTHER TRANSCRIPTION FACTOR BHLH121 1 280 IPR044579 GO:0003700|GO:0055072
Pvu11g1851 282 CDD bHLH_AtILR3_like 11 85 - -
Pvu11g1851 282 SMART finulus 12 62 IPR011598 GO:0046983
Pvu11g1851 282 PANTHER TRANSCRIPTION FACTOR BHLH121 1 280 - -
Pvu11g1851 282 MobiDBLite consensus disorder prediction 247 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1851 Pvu-Chr11 45342506 45345723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1851 1 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 62.698 6.83e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu11g1851 HLH 1.3e-08 No_clan