Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1842 GTGACGGCACCTTCACCACGCCGAGATTCACCAGATTTTTTATCGTTGATTCATTCTCATACGAACAACGCTTTTTCCGAAGAACCATTGTATAGCTCACCCTTCAATTATCGTACTATTACTCAGCTACGACAACTCTCTGACAAAGGGTTAATCATAACAACACCTGATTCTTGGTTTGTCAAGATAGTTTCTACCCTCTTTCTGTGCTCTAGCACTTTTGATGATGGGTTTTTGGATTATTTCCAGGTTGTTAGAAGGCTTAACAACCCCAACTTGGGTTTCATGTTCTATCAGTTTACAAGAGAAAGGTTGAGTATGGCGCATTCATTTTGGACTTATAATATGCTTTTGAGGTCCCTTTGTCGAGCAAGTCTCCACAGTTCAGCAAAATTGTTATATGATTCCATGAGGTCTGATGGGCAATTGCCTGATTCTGGGCTTTTGGGATTTTTGGTTTCTTCTTTTGCACTGGCTGACAGGTTTGATGTTTCAAAGGAATTGCTTGCTGAAGCTCAGTGCAATGGGATTCAAGTAAAGGTGATTGTTTATAACAACTTTTTGAACATATTGATTAAACACAATAAGTTAGATGATGCCATTTGTTTATTTAGGGAGCTTATGAGAACACATTCTTCTCTAGAAACCTTCACCTTCAACATTTTAATGCGGGGTTTATGCACAGCTGGAGAAGTTGATGAAGCTTTCAGGCTTCTCAGTGATATGAGAAGTTTTGGTTGTTTGCCCGATATAGTTACATATAACACTCTATTACATGGCTTATGTAGAATAGATCTAGTTGATAGAGCATTCGGTTTACTGAAAGAAGTTTGTCTAAAATGTGAGTTTGCCCCTAATGTTGTTAGCTATACAACAGTGATATCGGGTTATTGCAGATTGAGTAAGATGAAAGAGGCCTCCTCTCTTTTTGATGAAATGATTAGATCCGGAATCATGCCTAATGTCTTTACCTTTACTGCTCTCATTGACGGCTTTGTTAAGGCAAGTGACATGGTTTCTGCACTAGGTATGCACAAGAAGATGCTTTTACATGGCTGTCCTCCCAATGTTGTTACTTTGACTTCCTTAATTGATGGCTATTGCCGAATTGGATGGGTGGATCATGGCTTGGACTTATTGCATGAAATGAAAGCACGTCATGTTCCGGCAAATTTGTATACTTTCTCTGTTCTTATCAGTGCTTTGTGCAAGAGCAATAGACTGCAAGAAGCACATAATCTTTTGAGACTATTGAAGCAAAGTGACCTTGTTCCACAGTCTTTTGTCTACAATCCTGTCATTGATGGATATTGCAAATCTGGGAACATTGATGAGGCTAATGCACTTGTGGCAGAAATGGAAGAGAAA 1368 0.3911 VTAPSPRRDSPDFLSLIHSHTNNAFSEEPLYSSPFNYRTITQLRQLSDKGLIITTPDSWFVKIVSTLFLCSSTFDDGFLDYFQVVRRLNNPNLGFMFYQFTRERLSMAHSFWTYNMLLRSLCRASLHSSAKLLYDSMRSDGQLPDSGLLGFLVSSFALADRFDVSKELLAEAQCNGIQVKVIVYNNFLNILIKHNKLDDAICLFRELMRTHSSLETFTFNILMRGLCTAGEVDEAFRLLSDMRSFGCLPDIVTYNTLLHGLCRIDLVDRAFGLLKEVCLKCEFAPNVVSYTTVISGYCRLSKMKEASSLFDEMIRSGIMPNVFTFTALIDGFVKASDMVSALGMHKKMLLHGCPPNVVTLTSLIDGYCRIGWVDHGLDLLHEMKARHVPANLYTFSVLISALCKSNRLQEAHNLLRLLKQSDLVPQSFVYNPVIDGYCKSGNIDEANALVAEMEEK 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1842 456 Pfam PPR repeat family 216 263 IPR002885 -
Pvu11g1842 456 Pfam PPR repeat family 285 334 IPR002885 -
Pvu11g1842 456 Pfam PPR repeat family 355 404 IPR002885 -
Pvu11g1842 456 Pfam PPR repeat 423 454 IPR002885 -
Pvu11g1842 456 Pfam PPR repeat 113 141 IPR002885 -
Pvu11g1842 456 Pfam PPR repeat 183 208 IPR002885 -
Pvu11g1842 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Pvu11g1842 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 456 IPR002885 -
Pvu11g1842 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Pvu11g1842 456 Gene3D Tetratricopeptide repeat domain 86 173 IPR011990 GO:0005515
Pvu11g1842 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Pvu11g1842 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Pvu11g1842 456 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 36 456 - -
Pvu11g1842 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Pvu11g1842 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 285 IPR002885 -
Pvu11g1842 456 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 36 456 - -
Pvu11g1842 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Pvu11g1842 456 TIGRFAM PPR: pentatricopeptide repeat domain 252 286 IPR002885 -
Pvu11g1842 456 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Pvu11g1842 456 TIGRFAM PPR: pentatricopeptide repeat domain 393 425 IPR002885 -
Pvu11g1842 456 TIGRFAM PPR: pentatricopeptide repeat domain 288 322 IPR002885 -
Pvu11g1842 456 TIGRFAM PPR: pentatricopeptide repeat domain 113 145 IPR002885 -
Pvu11g1842 456 TIGRFAM PPR: pentatricopeptide repeat domain 358 391 IPR002885 -
Pvu11g1842 456 TIGRFAM PPR: pentatricopeptide repeat domain 323 357 IPR002885 -
Pvu11g1842 456 TIGRFAM PPR: pentatricopeptide repeat domain 429 455 IPR002885 -
Pvu11g1842 456 Gene3D Tetratricopeptide repeat domain 371 456 IPR011990 GO:0005515
Pvu11g1842 456 Gene3D Tetratricopeptide repeat domain 264 370 IPR011990 GO:0005515
Pvu11g1842 456 Gene3D Tetratricopeptide repeat domain 174 263 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1842 Pvu-Chr11 45248730 45250485 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1842 103 456 Glycosyltransferase AT1G05670 28.814 2.13e-48 175