Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1840 ATGTCGGTTCTGATCGTGACGAGCTTAGGGGACCTTGTGGTCGATTTGCACACCAACAAATGCCCCTTGACCTGCAAAAGTTTCTTGAAGCTTTGCAAGATGAAGTACTATAATGGGTGTTTATTTCACACTGTTCAAAAGGATTTTACAGCTCAAACTGGTGATCCAACTGGCACAGGAACTGGCGGTGATTCTGTTTACAAGTTTCTTTATGGCGATCAAGCTCGGTTTTTCAGCGATGAAATTCATATTGATCTTAAGCATTCCAAAACTGGAACAGTTGCCATGGCAAGTGCTGGGGAGAATTTAAATGCTTCACAGTTCTATATCACACTGCGTGATGACCTTGACTACCTTGATGGAAAGCACACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTAACTAGAATAAATGAGGCTTATGTAGATGACAAAGGAAGACCATATAAAAATATAAGAATCAAGCACACGTACATCCTAGAGGATCCTTATGATGATCCTTCTCAGCTATCTGAGTTCATTCCTGATGCTTCCCCAGAAGGAAAACCTAAAGATGAGGTTGAGGATGAAGTACGACTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAATCCAGCAGAACTTGAGGAGGTTATCAGATCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAGCCTCCCGACAATGTATTGTTTGTCTGTAAATTGAATCCAGTTACCGAGGATGAAGACTTGAATACTATATTTTCTCGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCACAAAACTGGTGACAGTTTATGCTATGCTTTTATAGGTCAGTATGTATATCCACTTTGTCATTTGTGCTTCTTTAATTGTGTTCAAGTGGTTCTTTCTCCCATTTTCTTTCCAATTTCTACTCCAGTTGCCTGGTTCTTTCCTATGTAA 981 0.4037 MSVLIVTSLGDLVVDLHTNKCPLTCKSFLKLCKMKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDDKGRPYKNIRIKHTYILEDPYDDPSQLSEFIPDASPEGKPKDEVEDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLNTIFSRFGTVSSAEIIRDHKTGDSLCYAFIGQYVYPLCHLCFFNCVQVVLSPIFFPISTPVAWFFPM* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1840 326 Gene3D - 1 173 IPR029000 -
Pvu11g1840 326 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 289 IPR000504 GO:0003723
Pvu11g1840 326 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Pvu11g1840 326 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Pvu11g1840 326 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Pvu11g1840 326 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Pvu11g1840 326 Gene3D - 178 290 IPR012677 -
Pvu11g1840 326 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Pvu11g1840 326 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 289 IPR000504 GO:0003723
Pvu11g1840 326 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Pvu11g1840 326 SUPERFAMILY RNA-binding domain, RBD 229 289 IPR035979 GO:0003676
Pvu11g1840 326 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 289 IPR035542 -
Pvu11g1840 326 SUPERFAMILY Cyclophilin-like 1 177 IPR029000 -
Pvu11g1840 326 CDD cyclophilin_RRM 4 169 IPR035538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1840 Pvu-Chr11 45235921 45240792 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1840 3 166 U-box Gene Family AT5G67530 39.634 2.00e-32 125