Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1839 ACTTCACCTTTCTCCAAATGTGGCATCAGGGCTTCCCTTGCCATTGAGCAACAAACTCTGCTGCAGACTAAAGTTGCTCTCCTTAGAATTGGCACCAGAGGAAGTCCACTAGCTCTGGCTCAAGCATATGAGACCAGAGACAAGCTCATGGCATCACATCCAGAGCTAGCAGAAGAAGGGGCTATTCAGATTGTAGTAATAAAAACAACTGGTGATAAAATACTATCACAACCTCTTGCAGACATCGGTGGGAAGGGCCTGTTCACAAAGGAAATTGATGAGGCACTCATAAACAGTGACATTGACATTGCTGTTCACTCAATGAAAGATGTTCCTACTTACTTACCTGATAAAACAATTCTACCATGTAACCTTCCACGTGAGGATGTTAGAGATGCATTTATATCCTTGAGTGCAGCTTCACTGGCTGATCTATCCTCTGGAAGTATTGTTGGTACTGCTTCACTCAGAAGGAAGTCACAAATACTCCACAGATATCCATCTCTAAATGTGGAGGAAAATTTCCGTGGCAATGTCCAAACAAGACTGAGAAAACTCAGCGAGGGTGTTGTCCAAGCTACCCTATTGGCTTTAGCTGGTCTCAAACGATTAAACATGACAGAAAATGTGACTTCAATCCTATCAATTGATGATATGCTTCCAGCTGTTGCCCAAGGTGCAATTGGAATAGCCTGTAGAACTAACGATGATAAAATGGCAGAATACCTTGCTTCACTGAATCATGAAGAAACAAAACTAGCAGTTTCCTGTGAAAGAGCCTTCCTTGAAACATTAGAAGGGTCTTGCCGCACTCCTATTGCAGGCTATGCTAGCAGAAACATGGATGGCAATTGCTTCTTCAGAGGATTAGTTGCTTCCCCAGATGGAACCCGTGTGCTTGAAACTTCCAGAATTGGTTCATATGTTGCTGAAGATATGATTAAGATGGGTAAAGATGCTGGGGAGGAGCTTCTTTCTCGAGCTGGACCTGGCTTTTTCAGTAGTTAG 1008 0.4315 TSPFSKCGIRASLAIEQQTLLQTKVALLRIGTRGSPLALAQAYETRDKLMASHPELAEEGAIQIVVIKTTGDKILSQPLADIGGKGLFTKEIDEALINSDIDIAVHSMKDVPTYLPDKTILPCNLPREDVRDAFISLSAASLADLSSGSIVGTASLRRKSQILHRYPSLNVEENFRGNVQTRLRKLSEGVVQATLLALAGLKRLNMTENVTSILSIDDMLPAVAQGAIGIACRTNDDKMAEYLASLNHEETKLAVSCERAFLETLEGSCRTPIAGYASRNMDGNCFFRGLVASPDGTRVLETSRIGSYVAEDMIKMGKDAGEELLSRAGPGFFSS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1839 335 PANTHER PORPHOBILINOGEN DEAMINASE 5 334 IPR000860 GO:0004418|GO:0033014
Pvu11g1839 335 ProSitePatterns Porphobilinogen deaminase cofactor-binding site. 258 274 IPR022419 GO:0004418|GO:0018160|GO:0033014
Pvu11g1839 335 PIRSF PBGD 9 335 IPR000860 GO:0004418|GO:0033014
Pvu11g1839 335 PANTHER BNAC02G01240D PROTEIN 5 334 - -
Pvu11g1839 335 Gene3D - 129 229 - -
Pvu11g1839 335 CDD PBP2_PBGD_1 27 306 - -
Pvu11g1839 335 TIGRFAM hemC: hydroxymethylbilane synthase 28 327 IPR000860 GO:0004418|GO:0033014
Pvu11g1839 335 Pfam Porphobilinogen deaminase, C-terminal domain 253 325 IPR022418 GO:0004418|GO:0033014
Pvu11g1839 335 SUPERFAMILY Periplasmic binding protein-like II 28 245 - -
Pvu11g1839 335 Gene3D - 28 237 - -
Pvu11g1839 335 SUPERFAMILY Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 247 334 IPR036803 GO:0004418|GO:0033014
Pvu11g1839 335 Pfam Porphobilinogen deaminase, dipyromethane cofactor binding domain 28 240 IPR022417 GO:0004418|GO:0033014
Pvu11g1839 335 PRINTS Porphobilinogen deaminase signature 71 91 IPR000860 GO:0004418|GO:0033014
Pvu11g1839 335 PRINTS Porphobilinogen deaminase signature 102 121 IPR000860 GO:0004418|GO:0033014
Pvu11g1839 335 PRINTS Porphobilinogen deaminase signature 150 167 IPR000860 GO:0004418|GO:0033014
Pvu11g1839 335 PRINTS Porphobilinogen deaminase signature 170 187 IPR000860 GO:0004418|GO:0033014
Pvu11g1839 335 PRINTS Porphobilinogen deaminase signature 257 274 IPR000860 GO:0004418|GO:0033014
Pvu11g1839 335 Hamap Porphobilinogen deaminase [hemC]. 27 327 IPR000860 GO:0004418|GO:0033014
Pvu11g1839 335 Gene3D - 248 334 IPR036803 GO:0004418|GO:0033014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1839 Pvu-Chr11 45229261 45232258 Dispersed