Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1832 ATGGGAGGGACACAAACGGAGAGAGAAGAGAAGGTGTCTTTGGAACTCAGTGAAGAAATTCTTCAGAGTATGGAAGTAGGAATGGCCTTCAAAGACTATAATGGTAGAATTAGTTCCTTGGACTTTCACAGGGCTTCCAGTTATCTAGTAACTGCTAGTGATGATGAATCCATTCGACTGTATGAGGTTACCAGTGGGACATGTTTGAAGACAATTAATAGCAAGAAGTATGGGGTTGACCTGGTTTGCTTCACATCTCATCCTACAACTGTCATATACTCTTCAAAAAATGGTTGGGATGAATCTTTGCGGCTTCTATCGTTACATGATAACAAGTATTTGAGATATTTCAAAGGTCACCATGACAGGGTTGTGTCGCTAAGCTTGTGCTCTCGGAAAGACTGCTTTATATCTGGTTCTTTAGATCGAACTGTTTTACTATGGGATCAAAGGGCTGAAAAGTGCCAGGGACTGTTACATGTACAAGGAAGGCCTGCTATATCATATGACGATCAAGGGCTTGTCTTTGCAGTTGCCTTTGGAGGATTCATAAGAATGTTTGATGCTCGCAAATATGAAAAGGGTCCCTTTGAGATATTTTCTGTTGGGGGAGATACTTCTGATGCAAATGTTGTGAAATTTAGTAATGATGGGAGTCTCATGCTTTTAACAACGGCAGATGGGCATATTCATGTACTTGATTCATTTCGTGGCACACTTTTATCCACATATAATGTCACACCTGTCTCATGCAACTCCACATTAGAAGCTTCTTTCAGCCCGGAGGGAATGTTTGTAATATCTGGTTCTGGGGATGGAAGCATATATGCATGGAGTGTTCGAAGTGGCAAAGAAGTTGCAAGTTGGAGGAGTGCAACTTCTGATACCGGACCTCCTGTAATAAAATGGGCTCCTGGAAGTCTTATGTTTGCTACTGGATCATCTGAGTTGTCATTCTGGATTCCAGATTTGTCTAAGTTGGGATCTTATGTTGGAAGAAAGTAG 1005 0.4139 MGGTQTEREEKVSLELSEEILQSMEVGMAFKDYNGRISSLDFHRASSYLVTASDDESIRLYEVTSGTCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSRKDCFISGSLDRTVLLWDQRAEKCQGLLHVQGRPAISYDDQGLVFAVAFGGFIRMFDARKYEKGPFEIFSVGGDTSDANVVKFSNDGSLMLLTTADGHIHVLDSFRGTLLSTYNVTPVSCNSTLEASFSPEGMFVISGSGDGSIYAWSVRSGKEVASWRSATSDTGPPVIKWAPGSLMFATGSSELSFWIPDLSKLGSYVGRK* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1832 334 Pfam WD domain, G-beta repeat 253 278 IPR001680 GO:0005515
Pvu11g1832 334 Pfam WD domain, G-beta repeat 35 61 IPR001680 GO:0005515
Pvu11g1832 334 Pfam WD domain, G-beta repeat 113 149 IPR001680 GO:0005515
Pvu11g1832 334 Gene3D - 4 191 IPR015943 GO:0005515
Pvu11g1832 334 PANTHER WD40 REPEAT PROTEIN SWD2 1 333 IPR037867 GO:0048188
Pvu11g1832 334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 117 149 - -
Pvu11g1832 334 PRINTS G protein beta WD-40 repeat signature 49 63 IPR020472 -
Pvu11g1832 334 PRINTS G protein beta WD-40 repeat signature 136 150 IPR020472 -
Pvu11g1832 334 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Pvu11g1832 334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 30 66 - -
Pvu11g1832 334 Gene3D - 192 330 IPR015943 GO:0005515
Pvu11g1832 334 SMART WD40_4 195 234 IPR001680 GO:0005515
Pvu11g1832 334 SMART WD40_4 110 149 IPR001680 GO:0005515
Pvu11g1832 334 SMART WD40_4 237 279 IPR001680 GO:0005515
Pvu11g1832 334 SMART WD40_4 23 62 IPR001680 GO:0005515
Pvu11g1832 334 ProSiteProfiles Trp-Asp (WD) repeats profile. 117 149 IPR001680 GO:0005515
Pvu11g1832 334 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 333 - -
Pvu11g1832 334 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 288 IPR001680 GO:0005515
Pvu11g1832 334 SUPERFAMILY WD40 repeat-like 23 315 IPR036322 GO:0005515
Pvu11g1832 334 ProSiteProfiles Trp-Asp (WD) repeats profile. 30 71 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1832 Pvu-Chr11 45126787 45131817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1832 114 320 Miscellaneous Gene Families AT5G08390 23.256 1.99e-06 47.8