LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g1830	ACACATTATTTGAACTTACGACATAGTATCACAGTCTCACCTTCTTCTTGCAGATTAGTCTTTCCATATTTGAAGCATCCTATGAGGCTTATCCTTCACAAACTTCTGCTTGCTTTCATGCATCTCTGGTTCTGCTTCAGTTCTTCTACTCATGTTGATGCAGCAGATGACAGTTTAAAGCCCGGTGACACATTCAACACCTCTTCAGAACTATATTCTAAGAGTCGCAAATATCTTCTGTATTTTAATTCTGTAACAAGTGGAGGTGAAATTCTCACTTACTTAACAATACAAAGTGAATATGAAGCTGCTATAGTTTGGGAGGGTAATAAAGAACAATCTGTCGACTATAACGATGCAGTTCTATCCTTAAACTTCTCTGGCGTGCTGAAAATAGAATCTTCATCTGTGAATAAACCAATTATTCTCTATTCTCCTCCTCAACCTATCAACAACACTGTGGCCACTTTGTTGGACACAGGCAACTTTGTGCTTCAACACCTTCACTCCAATGGGACAAACACTCTCTTGTGGCAGAGTTTTGATTATCCCTTTGCGACTTTGATCCCCACCATGAAGTTAGGTGTTAATCATAAAACAGGCCATCGTTCGTTACTTTCTTCGCAGAAGAATGAAGACGGTCCGACTCCAGGTGGCTTTAGTCTTGAATGGGAACCGAGGGGACAAGAACTGATGATAAGGAGACGAGGAAAAGTTTGTTGGAAAAGTGGGAAACTGAGGAACAATAGATTTGAGCACATTCCAGAAGATGCACAAGCCGTGTTGAAGTACAGCATAGTCTCCAATTTGGATGAAGACACCTTCTCTTTCACATCTACAAATGAAAACATTACACATATCTGGTCGTTATCGGATACTGGGAGGTTATATTACAATGACAAACAGGGATATGTTGCAAGGGCTGATCTGTGCTATGGATACAACAACACAGAAGGAGGGTGCCAAAGATGGCAGGATATACCCAAGTGCAGGATTCCTGGTGATGTGTTTACCAAAAAGAGTATTCACTCTAATGATGAAAATGTAACCTATGAAACAAAGGAGAATATTAATCACAGTGATTGTGAGGCTGCTTGCTGGGGCGATTGTAATTGCAATGGATTTGCAGAACTCTATACAGATGGGACTGGATGTAGATTCTTTCAATGGAATTCATCAAAAGATTATATAGTTGATGCCACTGTTTCGGGTCAAGACATTTACTTACTTGAGAACAAAGGGAACATAATCGATCATCCTCACGGTACAAAAAGGTGGATATGGATAAGTACAGTAATAGCAACTACTTTACTCATACTATGCGCATCCATTCTATGCCTGGCAGTAAAGAAACGAAAACATGTGCTTCAAGCTACAAATGAGTTTTCATCAGAGAATAAGTTAGGACAGGGAGGCTTTGGACCAGTTTATAAGGGAACTTTGCCAACAGGAGAGGAGGTTGCTATAAAAAGACTTGCAAGAAGTTCTGCACAAGGAATTGTTGAGTTTAAAAATGAACTAACACTTATATGTGAACTTCAGCACATGAATCTTGTTCAACTACTTGGTTGTTGCATTCATGATGAAGAGAAGATTCTAATTTACGAGTATATGCCCAACAAAAGCTTAGATTTCCATCTTTTCGATTCTACAAGAAGCAAATTACTTCATTGGAATAAGCGTTTCAACATAATAAAATGGATTTCTCAAGGATTATTGTATCTTCACAAGTACTCAAGACTCAAAGTATGGGAGTTATGGAAGGATGACAAATACTTTGAATTAATGGATCCATCATTAAATGAGGTATTTGATCACGAGGAAGTGCAAAGGTGTATTCATATTGGTCTCTTATGTGTTGAACATTATGCAAATGATCGACCCACAATGAGTGACATTATATTAATGTTGACAAGCAAGAGTTCAATAGTATCCTTACCTCAAAAACCTGCATTCTATGTTCAAAGGTATATGTATGATGAGAATTTATCTTCCTTAGAATTGTATACTGGTTCTACAGTAGGAATTACTTCTTCTACGGTAGAGATGACTGCTTCTACCTAA	2064	0.3823	THYLNLRHSITVSPSSCRLVFPYLKHPMRLILHKLLLAFMHLWFCFSSSTHVDAADDSLKPGDTFNTSSELYSKSRKYLLYFNSVTSGGEILTYLTIQSEYEAAIVWEGNKEQSVDYNDAVLSLNFSGVLKIESSSVNKPIILYSPPQPINNTVATLLDTGNFVLQHLHSNGTNTLLWQSFDYPFATLIPTMKLGVNHKTGHRSLLSSQKNEDGPTPGGFSLEWEPRGQELMIRRRGKVCWKSGKLRNNRFEHIPEDAQAVLKYSIVSNLDEDTFSFTSTNENITHIWSLSDTGRLYYNDKQGYVARADLCYGYNNTEGGCQRWQDIPKCRIPGDVFTKKSIHSNDENVTYETKENINHSDCEAACWGDCNCNGFAELYTDGTGCRFFQWNSSKDYIVDATVSGQDIYLLENKGNIIDHPHGTKRWIWISTVIATTLLILCASILCLAVKKRKHVLQATNEFSSENKLGQGGFGPVYKGTLPTGEEVAIKRLARSSAQGIVEFKNELTLICELQHMNLVQLLGCCIHDEEKILIYEYMPNKSLDFHLFDSTRSKLLHWNKRFNIIKWISQGLLYLHKYSRLKVWELWKDDKYFELMDPSLNEVFDHEEVQRCIHIGLLCVEHYANDRPTMSDIILMLTSKSSIVSLPQKPAFYVQRYMYDENLSSLELYTGSTVGITSSTVEMTAST*	688

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g1830	687	Gene3D	Phosphorylase Kinase; domain 1	444	537	-	-
	Pvu11g1830	687	Gene3D	Transferase(Phosphotransferase) domain 1	578	656	-	-
	Pvu11g1830	687	ProSiteProfiles	Protein kinase domain profile.	462	687	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu11g1830	687	SMART	blect_4	62	184	IPR001480	-
	Pvu11g1830	687	Gene3D	-	50	181	IPR036426	-
	Pvu11g1830	687	Pfam	D-mannose binding lectin	105	210	IPR001480	-
	Pvu11g1830	687	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	34	457	-	-
	Pvu11g1830	687	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	456	583	-	-
	Pvu11g1830	687	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	583	662	-	-
	Pvu11g1830	687	SUPERFAMILY	Protein kinase-like (PK-like)	454	659	IPR011009	-
	Pvu11g1830	687	Pfam	PAN-like domain	335	387	IPR003609	-
	Pvu11g1830	687	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	34	457	-	-
	Pvu11g1830	687	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	456	583	-	-
	Pvu11g1830	687	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	583	662	-	-
	Pvu11g1830	687	SUPERFAMILY	alpha-D-mannose-specific plant lectins	105	211	IPR036426	-
	Pvu11g1830	687	Pfam	Protein tyrosine and serine/threonine kinase	465	577	IPR001245	GO:0004672\|GO:0006468
	Pvu11g1830	687	ProSiteProfiles	Bulb-type lectin domain profile.	56	178	IPR001480	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g1830	Pvu-Chr11	45106776	45110315	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu11g1830	455	583	Receptor kinase-like Gene Family	AT4G04570	58.140	2.31e-45	165

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pvu11g1830		PK_Tyr_Ser-Thr	1.7e-18	CL0016