Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1814 ATGGCTCGAGCAGCTTGCAACCATCTTCACTTGGTTCCAAGTTTAGTTCATCCATTGAAGTCAACCCTCTTCACAAATCACACTCTTTCTACCACCACACGGACTCGCTTCTATGACATTCAGCGAAGGTTCTCTTCTTCTTCATCCAAGATAAGCATGAGCCTCAAGGCTGGTATCGTTGGCCTCCCCAACGTTGGCAAATCCACTCTCTTCAATGCCGTTGTGGAAAACGGAAAGGCCCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCCGATTCTCGTCTTCATGTACTCTCTGATCTCAGCAAATCTCAACGATCTGTTCCAGCATCTATAGAATTTGTGGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGCGAGGGGTTGGGTAACAAGTTTTTGTCGCATATCCGTGAGGTGGATTCTATACTTCAGGTTGTACGATGTTTTGAAGACAATGACATTGTTCATGTGAGTGGGAAAGTTGACCCCAAGTCTGATATCGATGTTATCAATTTGGAGCTCGTTTTCTCAGATTTGGATCAGATTGAGAAAAGAATTGAAAAGCTAAAGAAGGGCAAGGCAAGGGATTCACAATCTAAACTCAAGGAAGAGGCAGAAAAGTCTGCATTGGAAAAGATTCAACAGGTGCTTATGGATGGAAAGCCTGCACGATCTGTGACCTTAACAGATTTTGAAAGTGATGCTGTAAAACATCTCTGCTTACTCACCATGAAACCTATTATATATGTGGCAAATGTTGCAGAAACTGATCTTGCAGATCCTGCAAACAATAATTTTGTCAAGGATGTTACAAATGTTGCATCTGAGTTGCAGTCTAGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAGCTTACTGAGCTACCGACTGAAGAACGAGAAGAATATTTGCAATCTCTTGGTGTTAGTGAAAGTGGTCTTGGAAACTTAATCAGGGCAACTTATGACCTTTTGGGTCTGAGAACTTATTTTACTTCTGGTGAAAAGGAGACAAAAGCATGGACAATACTTTCAGGAATGACTGCACCTCAAGCTGCTGGAGTTATTCACTCTGACTTTGAGAAGGGTTTCATTCGAGCAGAGACAGTGTCTTATGATGATTTTGTTGCCGCTGGTTCACTTGGTGCAGCACGAGAGAAAGGACTGTTGAGATCTGAAGGTAAAGAATATGTTGTACAAGAAGGAGATGTGATGTTGTTTCGGTTCAATGTTTAG 1269 0.4216 MARAACNHLHLVPSLVHPLKSTLFTNHTLSTTTRTRFYDIQRRFSSSSSKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQRSVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVSGKVDPKSDIDVINLELVFSDLDQIEKRIEKLKKGKARDSQSKLKEEAEKSALEKIQQVLMDGKPARSVTLTDFESDAVKHLCLLTMKPIIYVANVAETDLADPANNNFVKDVTNVASELQSRIVTISAQVEAELTELPTEEREEYLQSLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTILSGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLGAAREKGLLRSEGKEYVVQEGDVMLFRFNV* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1814 422 CDD TGS_YchF_OLA1 336 420 IPR013029 -
Pvu11g1814 422 Pfam Protein of unknown function (DUF933) 338 421 IPR013029 -
Pvu11g1814 422 SUPERFAMILY TGS-like 338 419 IPR012676 -
Pvu11g1814 422 PRINTS GTP1/OBG GTP-binding protein family signature 57 77 IPR006073 GO:0005525
Pvu11g1814 422 PRINTS GTP1/OBG GTP-binding protein family signature 79 97 IPR006073 GO:0005525
Pvu11g1814 422 PRINTS GTP1/OBG GTP-binding protein family signature 123 138 IPR006073 GO:0005525
Pvu11g1814 422 PRINTS GTP1/OBG GTP-binding protein family signature 140 158 IPR006073 GO:0005525
Pvu11g1814 422 Hamap Ribosome-binding ATPase YchF [ychF]. 54 422 IPR004396 GO:0005524|GO:0005525|GO:0016887
Pvu11g1814 422 Gene3D - 101 421 IPR012675 -
Pvu11g1814 422 CDD YchF 57 336 IPR041706 -
Pvu11g1814 422 Pfam 50S ribosome-binding GTPase 57 166 IPR006073 GO:0005525
Pvu11g1814 422 TIGRFAM TIGR00092: GTP-binding protein YchF 53 422 IPR004396 GO:0005524|GO:0005525|GO:0016887
Pvu11g1814 422 PANTHER OBG-LIKE ATPASE 1 53 422 - -
Pvu11g1814 422 Gene3D - 166 256 IPR023192 -
Pvu11g1814 422 PANTHER OBG GTPASE FAMILY 53 422 - -
Pvu11g1814 422 Gene3D - 55 337 IPR027417 -
Pvu11g1814 422 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 360 IPR027417 -
Pvu11g1814 422 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 55 337 IPR031167 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1814 Pvu-Chr11 44909509 44919840 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1814 11 44909509 44919840 Pvu11g1814 11 44909509 44919840 ECH