Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1812 ATGGCTGTTGAAGCTCGTCACTTTAACATCTTCCACTCCCAACAACTCATACCCAATAGAGAAACCTTGACGAACACAATGGATGCCACCATCATGAACATGTACGCCAGCCAAACGGGTTTGGGTAATTACTCCATGCTGCCTCTCTCCGGCACCACCACCGCGTCGGAGACCTTTTTCCCGCCGCCTCAGTTCAGCTCCCTCCCTCAGAAACCCGCTGTCTTGGAATCCGACAACAGCACTCTCTCCCACAACAACGTTGTCTCCGTTCCCAGAAAACGCTCCAGAGATTCCATCCACGACAACAATTTCCCTTTCCATTCCTACCCTCAGAAGAAAACCGATTCTTTCTCCTTCCTCGGCGAAGACATTTCCTCTCACATCCACCGTCAACAACTCGACCTCGATGCCCTCGTCTCCCAACACATGGAGAAGGTTAGGATGGAATTAGAAGAGAAGAGAAAACGGCATGCAAGAAGATTGATGGAGAGTATTGAGGCGGAAATGGCGAAGAGGCTGAGAGCGAAAGAGGAAGAGATTTTGAAGATTGAAAAATTGAATTGGGTTTTGGAAGAGAAAGTGAGGTCTCTGAGCATCGAGAATCAGTTATGGCGCGACCTGGCCCAGACCAACGAGGCCACTGCCAATGCCCTCCGCACAAACCTCGAGCAGGTGCTCGCGCAGGTGGCAGCGCCGCCGGATACGGCGGAGGAAGACGCGGAGTCGTGCTGCGGAAGCAGCGACGAGGGATGGCGCACATTAGCCACCGGGGCGCAGGATAAGGAGAAGGAAGGTTGCAGCGGAAGGAAAGAAAATATTATTATTGTTAATAATAATGATAATAATAATAATATTAAAAATAAAAATAATCAGAAGGAGAATGAAAAAAGCGGTGAGAAGAGATTGTGCAGAAAGTGTGGGAAAGAGGAATCGTGCGTGCTAATCTTACCGTGCAGGCACCTATGTGTCTGCACAGGTTGCGGGTCTAGTTTAGACTCTTGTCCTGTCTGTAAATCCTTCAAAAACGCCAGTGTTCTTGTAAACATGACATTATAA 1056 0.4877 MAVEARHFNIFHSQQLIPNRETLTNTMDATIMNMYASQTGLGNYSMLPLSGTTTASETFFPPPQFSSLPQKPAVLESDNSTLSHNNVVSVPRKRSRDSIHDNNFPFHSYPQKKTDSFSFLGEDISSHIHRQQLDLDALVSQHMEKVRMELEEKRKRHARRLMESIEAEMAKRLRAKEEEILKIEKLNWVLEEKVRSLSIENQLWRDLAQTNEATANALRTNLEQVLAQVAAPPDTAEEDAESCCGSSDEGWRTLATGAQDKEKEGCSGRKENIIIVNNNDNNNNIKNKNNQKENEKSGEKRLCRKCGKEESCVLILPCRHLCVCTGCGSSLDSCPVCKSFKNASVLVNMTL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1812 351 ProSiteProfiles Zinc finger RING-type profile. 303 338 IPR001841 -
Pvu11g1812 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 347 IPR013083 -
Pvu11g1812 351 Coils Coil 275 302 - -
Pvu11g1812 351 Pfam Zinc finger, C3HC4 type (RING finger) 300 339 - -
Pvu11g1812 351 Coils Coil 148 178 - -
Pvu11g1812 351 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 349 IPR017066 -
Pvu11g1812 351 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1812 Pvu-Chr11 44884218 44886157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1812 270 339 Miscellaneous Gene Families AT4G39050 24.286 1.89e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1812 11 44884218 44886157 Pvu11g1812 11 44884218 44886157 ECH
Pvu5g0595 5 7673331 7674993 Pvu11g1812 11 44884218 44886157 PCT