Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1809 ATGAAGGATGCTGGTAGAAAACAAGGTACACTGTCACCATGTGCAGCATGCAAGCTTCTTCGAAGGAGATGCGCACAGGACTGTGTCTTTGCTCCTTATTTTCCTGCAGATGAGCCCCATAAGTTTGCCAGTGTGCACAAGGTTTTTGGGGCTAGCAATGTCAACAAAATGTTACAGGAGCTAGCAGAGTACCAACGAAGTGATGCTGTGAGTTCAATGGTGTATGAAGCGAATGCAAGGGTGAGAGATCCCGTGTATGGATGTGTGGGAGCCATATCCTCTCTGCAGCAACAAGTTGATGTTTTACGAACCCAGTTGGCACTTGCAGAAGCAGAGGTGGTGCAGATGAGAATGAGCCAGGTTTCAAGTTCCTCTCACCAACCAAAACCAGTTCCTGCACCCTCCAATTCATCCTCACAAAACCTGTCTCCACCAAGAAGACTTGCCATGGCCACCACCAACTCCCTTTTTTCCATGGACATGGTCGTTGATCACCCCAACATGGGCGAGTCTTTGTGGTCATGTTAG 528 0.4848 MKDAGRKQGTLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELAEYQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLRTQLALAEAEVVQMRMSQVSSSSHQPKPVPAPSNSSSQNLSPPRRLAMATTNSLFSMDMVVDHPNMGESLWSC* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1809 175 Coils Coil 92 112 - -
Pvu11g1809 175 MobiDBLite consensus disorder prediction 119 147 - -
Pvu11g1809 175 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Pvu11g1809 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 172 - -
Pvu11g1809 175 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Pvu11g1809 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1809 Pvu-Chr11 44798536 44804073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1809 1 175 AS2 family AT1G31320 65.143 2.96e-70 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu11g1809 LOB 5.2e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1809 11 44798536 44804073 Pvu11g1809 11 44798536 44804073 ECH