Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1802 ATGTTGACAAGAACACAGCAGTTCCATTCGCAAGCATCGCTAGAATTTCAGAACAAAAGAGGATTTTGCTTCCAAGACTGCGTCTTCCTCTTGCAGCACCTGCGGGAGCACAAAGACGTAAACTGTGGAAGAATCCTTCACTCTCTTTTAGTTAAAAGTGCCCTCTTCATGGATGTCTTTGTACAAAACAATATGATTAGATTTTATGGAGATATTGGAGAAGTTCATAATGCACGTAGGTTGTTTGATGAAATTCCTATGCCGAGCTTGGTTTCTTGGACCAGCTTGGTCTCTTGTTATGTTCACGTGGGGCAACATGAAATGGGTCTGAGCTTGTTTCGTGGCTTGTGTCGGTCTGGGGTGCGCCCCAATGAATTTGGTTTCTCTGTGGCGCTCAAGGCTTGCAAGGAGATGTGTGATGCTGTGATGGGAAAGCTCATTCATGGGTTGGTAATCAAAAGTGGCTTTGATTCGCATAGCTTTTGCAGTGCTTTGATTCTTCACATGTATGCTGATTGTGGGGATATTGAGAATTCGAGGAAGGTTTTTGATGGGGTTTGTTATGATGAAAGGTCTGAGGCATTGTGGAATACTTTGCTGAATGCTTATGTGGAGGTGTCTGATGTGAAGGGTTCTCTGAAGTTGTTTCATGAGATGGGGCACTCTTCTGAGTCGCGGAACCACTTTACTTACACAATCATTGTTAAACTCTGTGCTGATGTGTTGGATGTTGAACTTGGAAGGTCTCTTCATGGCCAGATTGTGAAGATTGGGATTGAAAATGATGTTGTCGTGGGTGGGACTCTTATTGACTGCTACGTTAAACTGCAATTATTAGATGATGCTCGTAAAATTTTTCAAGTTCTCGATGATAAGGATAACGTGGCAGTATGTTCTTTACTTTCTGGGTTTAATCAAGTCGGAAAATCTAAGGAAGGACTTGCTGTATATGTTGATTTTCTTTCTGGAGGCAACAAACCAGACCCATTTACTTGTGCAAGTGTTGTCAGTTTGTGCTCAAATTTGGAGACACAGCTTTGTGGTAGTCAAATTCACTGTGGTGTCATCAAACTTGGCTTCATGTTGGATTCATATCTTGGCAGTGCATTTATCAACATGTATGGAAATTTTGGGATGATGTCTGATGCTTATAGATGTTTTCTTGACGTTTGCAATAAAAATGAAATATGTGTAAATGCCATGATGAACACTTTAATTTTCAACTCAAATGATTTAAAAGCTATAGAGCTGTTCTGTGGGATGAGGGAAGTTGGTATTGCACAAAGCAGTTCTTCAATCAGTTATGTTCTGCGGGCTTGTGGGAACCTTTGTATGCTTAAAGACGGACAGTCTTTTCATTCTCTTGTGATTAAAATTCCTTTTGAAGATGACAGTAGATTGGGCTTAGAAAATGCTCTTCTTGAGATGTATATTAGATGTAGAGCTATTGATGATGCAAAATTAGTGTTCAGAAACATGCCAACACAAAATGAGTTTTCCTGGACTACTATCATATCTGGATGTGGTGAATCAGGGCACTTCCTAGAAGCCTTAGGGATCTTCTGTGATATGCTTTTATATTCAAAACCAAGTCAGTTCACTTTAATCAGTGTTATTCAGACTTGTACAGAAATAAAGGCAATAAATGTAGGAAAACAAGTCCAATCCTATATCATGAAAGTAGGATTTGAATATCATCCGTTTGTTGGAAGTGCTCTGATTAACATGTATGCAGTATTTAAAGATGAAACTTTGAATGCTTTACAGGTTTTCTTGTCCATGAAGGAGAAGGATCTTATCTCTTGGAGTGTCATGTTAACAGCATGGGTTCAAAATGGTTATCATGAAGAAGCAGTTCAGCATTTTGCAGAATTCCAAACTGTTCCCATTTTTCAGGTTGACGAGTCTATCTTATCCAGCTGTATCTCAGCTGCTGCTGGCTTAGCAGCATTGGACATAGGCAAATGTTTCCATTCCTGGGCTATCAAAGTTGGCCTTGAGGTTGATCTTCATGTGGCTTCTTCCATTACTGACATGTATAGTAAATGTGGAAACATTAAGGATGCCTGCAAGTTTTTCAATACTATCAGTGACCATAATTTACTAACCTGGACGGCTATGATATATGGTTATGCTTATCACGGGTTTGGTAGAGAAGCCATTGACCTGTTTAACAGAGCTCAAGAAGCTGGTTTGGAACCTGATGGTGTCACCTTCACTGGGGTTTTAGCTGCTTGTAGCCATGCTGGATTAGTGGAAGAAGGTTGCCAATATTTTAGGTACATGAGAAGTAAATACAACAGTGAATTAACTATAAATCATTATGCCTGCATGGTTGATCTTCTTGGTAGGGCAGCAAGATTGGAAGAAGCAGAGGCTGTGATAAAAGAAGCTCCATTTCAGTCAAAATCTCTTTTATGGAAGACTTTGCTAGGTGCCTGCACTAAACATGAGAATGCTGAAATAGGAGAAAGAATATCAAACATCCTTGCTGATCTAGAACTGAATGAACCCTCAACCTATGTTCTTCTGTCTAACATTTATGCATCAGCATCAATGTGGAAAAATTGCATAGAGTTGAGAAACAAAATGGTAGAAGGGAGCATTACTAAGCAACCTGGTAGTAGTTGGATTCAGTTGGCAGGTTAA 2649 0.3971 MLTRTQQFHSQASLEFQNKRGFCFQDCVFLLQHLREHKDVNCGRILHSLLVKSALFMDVFVQNNMIRFYGDIGEVHNARRLFDEIPMPSLVSWTSLVSCYVHVGQHEMGLSLFRGLCRSGVRPNEFGFSVALKACKEMCDAVMGKLIHGLVIKSGFDSHSFCSALILHMYADCGDIENSRKVFDGVCYDERSEALWNTLLNAYVEVSDVKGSLKLFHEMGHSSESRNHFTYTIIVKLCADVLDVELGRSLHGQIVKIGIENDVVVGGTLIDCYVKLQLLDDARKIFQVLDDKDNVAVCSLLSGFNQVGKSKEGLAVYVDFLSGGNKPDPFTCASVVSLCSNLETQLCGSQIHCGVIKLGFMLDSYLGSAFINMYGNFGMMSDAYRCFLDVCNKNEICVNAMMNTLIFNSNDLKAIELFCGMREVGIAQSSSSISYVLRACGNLCMLKDGQSFHSLVIKIPFEDDSRLGLENALLEMYIRCRAIDDAKLVFRNMPTQNEFSWTTIISGCGESGHFLEALGIFCDMLLYSKPSQFTLISVIQTCTEIKAINVGKQVQSYIMKVGFEYHPFVGSALINMYAVFKDETLNALQVFLSMKEKDLISWSVMLTAWVQNGYHEEAVQHFAEFQTVPIFQVDESILSSCISAAAGLAALDIGKCFHSWAIKVGLEVDLHVASSITDMYSKCGNIKDACKFFNTISDHNLLTWTAMIYGYAYHGFGREAIDLFNRAQEAGLEPDGVTFTGVLAACSHAGLVEEGCQYFRYMRSKYNSELTINHYACMVDLLGRAARLEEAEAVIKEAPFQSKSLLWKTLLGACTKHENAEIGERISNILADLELNEPSTYVLLSNIYASASMWKNCIELRNKMVEGSITKQPGSSWIQLAG* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1802 882 Gene3D Tetratricopeptide repeat domain 145 243 IPR011990 GO:0005515
Pvu11g1802 882 Gene3D Tetratricopeptide repeat domain 354 449 IPR011990 GO:0005515
Pvu11g1802 882 Gene3D Tetratricopeptide repeat domain 467 556 IPR011990 GO:0005515
Pvu11g1802 882 Gene3D Tetratricopeptide repeat domain 244 346 IPR011990 GO:0005515
Pvu11g1802 882 Gene3D Tetratricopeptide repeat domain 5 144 IPR011990 GO:0005515
Pvu11g1802 882 Pfam E motif 817 879 IPR046848 -
Pvu11g1802 882 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 326 626 - -
Pvu11g1802 882 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 110 423 - -
Pvu11g1802 882 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 414 880 - -
Pvu11g1802 882 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 27 118 - -
Pvu11g1802 882 TIGRFAM PPR: pentatricopeptide repeat domain 703 735 IPR002885 -
Pvu11g1802 882 TIGRFAM PPR: pentatricopeptide repeat domain 737 765 IPR002885 -
Pvu11g1802 882 TIGRFAM PPR: pentatricopeptide repeat domain 91 125 IPR002885 -
Pvu11g1802 882 TIGRFAM PPR: pentatricopeptide repeat domain 195 219 IPR002885 -
Pvu11g1802 882 TIGRFAM PPR: pentatricopeptide repeat domain 499 525 IPR002885 -
Pvu11g1802 882 Gene3D Tetratricopeptide repeat domain 631 881 IPR011990 GO:0005515
Pvu11g1802 882 Pfam PPR repeat 499 525 IPR002885 -
Pvu11g1802 882 Pfam PPR repeat 600 624 IPR002885 -
Pvu11g1802 882 Pfam PPR repeat 268 287 IPR002885 -
Pvu11g1802 882 Pfam PPR repeat 91 121 IPR002885 -
Pvu11g1802 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 700 734 IPR002885 -
Pvu11g1802 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Pvu11g1802 882 Pfam PPR repeat family 195 239 IPR002885 -
Pvu11g1802 882 Pfam PPR repeat family 700 746 IPR002885 -
Pvu11g1802 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1802 Pvu-Chr11 44733346 44735994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1802 197 881 Glycoside Hydrolase AT3G49170 30.583 2.02e-109 354