LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g1794	ATGGGTCGTCGGAAAATTCAGATTGCGAGAGTGAAGGACCCCAACACGAGACAAATCACGTTTTCAAAGCGTCGAACAGGTTTGTTCAAGAAAGCGAACGAGTTGTCCATCATGTGTGGTGCAAAGATTGCCATTGTGGTGTTCTCTCCGGGGAACAAACCTTACTCGTTTTCCCACCCTGGAGTTCATCTTGTTGCTGCAGAATTTCTTCAGCAAGATCTTAGACCAAACCAACTCCAAAGAGGACCCTCTTTTGATGTTTATAAGAATCACTACTTTAATCTGCAGAATCTTGATCTCATGAGACAGTTGGCTGAGGAAGAAAGTAAAAGTGCAATGCTTGATGAAGCTATCGGTCATGGCAAAGGAACTCGACTCTCTGAACTTCAAAAACTACACACTTCTCTTGCTGATATCAATTCAAAGGTGAAGAGTGAGATCGAGGCTGCAGAAACTATGATACTCTTTTCACAGGAGGGAGTAGAATTTCCTTCTGCAACAAGAGAGGAAAATTAG	516	0.4283	MGRRKIQIARVKDPNTRQITFSKRRTGLFKKANELSIMCGAKIAIVVFSPGNKPYSFSHPGVHLVAAEFLQQDLRPNQLQRGPSFDVYKNHYFNLQNLDLMRQLAEEESKSAMLDEAIGHGKGTRLSELQKLHTSLADINSKVKSEIEAAETMILFSQEGVEFPSATREEN*	172

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g1794	171	SUPERFAMILY	SRF-like	1	72	IPR036879	GO:0003677\|GO:0046983
	Pvu11g1794	171	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Pvu11g1794	171	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Pvu11g1794	171	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Pvu11g1794	171	CDD	MADS	2	60	-	-
	Pvu11g1794	171	Gene3D	-	14	82	IPR036879	GO:0003677\|GO:0046983
	Pvu11g1794	171	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Pvu11g1794	171	PANTHER	MADS BOX PROTEIN	2	162	-	-
	Pvu11g1794	171	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL29	2	162	-	-
	Pvu11g1794	171	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Pvu11g1794	171	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g1794	Pvu-Chr11	44518424	44518939	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu11g1794	1	69	Type I MADS-box Gene Family	AT3G66656	62.319	2.48e-28	102

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Pvu11g1794		SRF-TF	7e-24	No_clan