Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1784 ATGCCCCTAAAAGTTTCTCGCCGCCGCCACTGCTGCCGCCGCCGCCAGGAAGATGTGCGTGCAGGAAAGCTTAGTAGCTTCAGTCTAACACTTGCATACATATTTCTCGTTGTCTTCATCATCATCTTCTTCTTCGTCGGTTTGGTATATTTCTACATGCAAAGGCGATCCTCCTCGACGAATCCCGCGGCCGACAACATCCAAGGGCAAGCGGTGTCAAATCTCGTGGCTTCGAGACCTCTGATGGTGGTGGTCGTGGTGGCCGAAGTAGCTGGGGACTGTACTATCTGTCTGGAGGGGGTGGTAGAGGGAGAAGAGGTGAAGATGACTGTCCAGTGTAAGCATATATTCCACGCGAACTGCATCGACACTTGGCTGGAGAACCATGTTACGTGCTCGGTGTGCCAATATTCTGATATGGGTGGAGAGGATGAGCTTGTGACGGTAGGAGGAGGTAAAGAAGAAGATGCAGAAGTTTCTGGAACAAACTTGGAGTAG 498 0.5141 MPLKVSRRRHCCRRRQEDVRAGKLSSFSLTLAYIFLVVFIIIFFFVGLVYFYMQRRSSSTNPAADNIQGQAVSNLVASRPLMVVVVVAEVAGDCTICLEGVVEGEEVKMTVQCKHIFHANCIDTWLENHVTCSVCQYSDMGGEDELVTVGGGKEEDAEVSGTNLE* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1784 165 Pfam Ring finger domain 93 136 IPR001841 -
Pvu11g1784 165 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Pvu11g1784 165 SUPERFAMILY RING/U-box 93 137 - -
Pvu11g1784 165 PANTHER RING-H2 FINGER PROTEIN ATL2 29 138 - -
Pvu11g1784 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 139 IPR013083 -
Pvu11g1784 165 SMART ring_2 94 135 IPR001841 -
Pvu11g1784 165 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 29 138 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1784 Pvu-Chr11 44336276 44336773 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1784 25 162 C3H Transcription Factor Family AT2G27940 28.049 6.91e-15 67.8