Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1783 ATGGAAGAACATAAGATGGAAAAAGATAGCAACGTTAATCTTAGAAAAGAAACCATGCACCGAATAATGTTCACCGTTCCTCCTTTCCCTCGTGCCCCTAAAGGTTTCTCGTCGCCGCTACTGCCGCCGCCAGGAAGATGTGCAGGAAAGCTTAGTAGCTTCAGTCTAACACTTGCATACATATTTCTCGTTGTCTTCATCATCATCTTCTTCTTCGTCGGTTTGGTATATTTCTACATGCGAAGGCGATCCTCCTCGACGAACCCCGCGGCCGGAAACATCCAAGGGCAAGCGGTGTCGAATCTTGTGGCTTCGAGACCCCTGATGGTGGTGGTCGTGGTGGCCGAAGCAGCTGGGGAGTGTACTATCTGTCTGGAGGGGGTGGCAGAGGGAGAGGAGGTGAAGATGACTGTCCAGTGTAAGCACATATTCCACGCGCACTGCATCGACACTTGGCTGCAGAACCATGTTACGTGCCCAGTGTGGCGATATTCTGAGATGGATGGAGAGGAGGAGCTTGTGACGGTGGGAGGAGGTGAAGAAGAAGATGCAGAAGTTTCTGGAACAAACTTGGAGTAG 579 0.5095 MEEHKMEKDSNVNLRKETMHRIMFTVPPFPRAPKGFSSPLLPPPGRCAGKLSSFSLTLAYIFLVVFIIIFFFVGLVYFYMRRRSSSTNPAAGNIQGQAVSNLVASRPLMVVVVVAEAAGECTICLEGVAEGEEVKMTVQCKHIFHAHCIDTWLQNHVTCPVWRYSEMDGEEELVTVGGGEEEDAEVSGTNLE* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1783 192 Pfam Ring finger domain 120 161 IPR001841 -
Pvu11g1783 192 PANTHER RING-H2 FINGER PROTEIN ATL2 58 165 - -
Pvu11g1783 192 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Pvu11g1783 192 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 58 165 IPR044675 -
Pvu11g1783 192 SMART ring_2 121 162 IPR001841 -
Pvu11g1783 192 CDD RING-H2_EL5_like 120 163 - -
Pvu11g1783 192 SUPERFAMILY RING/U-box 120 161 - -
Pvu11g1783 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 168 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1783 Pvu-Chr11 44335313 44335891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1783 61 182 Rapid Response to Elicitors AT3G05200 33.803 3.37e-17 76.6