Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1778 ATGCGAAGGAGCTCGACGAACCCTGCGGCGGCCAGCAACATCCAAGGGCAAGCGCCCGTGGCTTCGAGACCTCTGACTGTGGTAGCCGTGGTGGCCGAAGCAGCTGGGGAGTGCAGTATCTGCCTAGAGGGGGTGGCAGAGGGAGAGGACGTGAAGATGACTGCCCATTGCAGGCACATCTTCCACGCGAACTGCATCGACACTTGGTTGGAGAACCATGTGACGTGCCCGGTGTGCCGATATTCCGAGATGGGTGGAGAGGAGGAGCTTGTAACGGTGGGAGGAGGAGGAGGTGAAGAAGAAGAAGATGCAACAGAGTAG 321 0.5919 MRRSSTNPAAASNIQGQAPVASRPLTVVAVVAEAAGECSICLEGVAEGEDVKMTAHCRHIFHANCIDTWLENHVTCPVCRYSEMGGEEELVTVGGGGGEEEEDATE* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1778 106 SMART ring_2 38 79 IPR001841 -
Pvu11g1778 106 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 23 82 IPR044675 -
Pvu11g1778 106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 85 IPR013083 -
Pvu11g1778 106 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED 23 82 - -
Pvu11g1778 106 ProSiteProfiles Zinc finger RING-type profile. 38 80 IPR001841 -
Pvu11g1778 106 SUPERFAMILY RING/U-box 36 82 - -
Pvu11g1778 106 Pfam Ring finger domain 37 80 IPR001841 -
Pvu11g1778 106 CDD RING-H2_EL5_like 37 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1778 Pvu-Chr11 44264184 44264504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1778 2 90 C3H Transcription Factor Family AT2G27940 38.947 8.22e-18 73.6