Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1776 ATGATCTTCTTTTTCGTCGTTTTGGTATATTTCTACATCCGAAGGCGATCCTCTTCGACGAATCCCACGGCCTGCGACATCCAAGGGCAAGCGGTGTCGAATCCCATGGCTTCGAGACCTCTGATGGTGGTGGCCGAAGCAGTTGGGGAGTGTACTACGTGTCTGGCGGGGGTGGCAGAGGGAGAGGACGTGAAGATGACTGCTCACTATAAGCACATCTTCCACGCGAACTGCATCGACACTTGTCTGGAGAACCATGTTACGTGCCCAATGTGCTGA 279 0.5341 MIFFFVVLVYFYIRRRSSSTNPTACDIQGQAVSNPMASRPLMVVAEAVGECTTCLAGVAEGEDVKMTAHYKHIFHANCIDTCLENHVTCPMC* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1776 92 PANTHER RING-H2 FINGER PROTEIN ATL33 18 92 - -
Pvu11g1776 92 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 92 IPR013083 -
Pvu11g1776 92 SUPERFAMILY RING/U-box 50 92 - -
Pvu11g1776 92 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 18 92 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1776 Pvu-Chr11 44258369 44258647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1776 27 92 C3H Transcription Factor Family AT2G27940 37.879 1.19e-11 56.6