Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1774 ATGCGAAGGCGATCCTCCTCGACGAACTCCGTGGCCGACAACATCCAAGGACAAGTAGTGTCGAATCCCGTGGTTTCGAGACCTCTGACGGTGGTGGCCGTGGTTGCCGAAGCAGCTGGGGAGTGTACTATGTGTCTGGAGGGGTGGCAGAGGGAGAGGACAACTGCAGGAAAGTCCAGTAGCTTCAGTCCAAAACTTGCTTACATACTTCTTGTTGTCTTCATCATCGTCTTCTTCTTCGTCTCTTTTATATACTTCTACATGCGAAGGAGCTCGACGCACCCCGCGACGGCCGACAACATCCAAGGGCAAGCACTCGTGGCTTCGAGACCTCTGATTGTGGTGGCCGTGGTGGCCGAAGCAGCTGGGGAGTGCAGTATCTACCTGGAGGGGGTGGCAGAGGGAGAGGACGTGAAGATGACTGCCCATTGCAGGCACATCTTCCACGCGAACTGCATCGACACTTGGTTGGAGAACCATGTGACGTGCCCGGTGTGCCGACATTCTGAGATGGGTGGAGAGGAGGAGCTTGTGACGGTGGGAGGAGGAGGAGGAGGAGGAGGTGAAGAAGAAGATGCAACAAAGTAG 588 0.5578 MRRRSSSTNSVADNIQGQVVSNPVVSRPLTVVAVVAEAAGECTMCLEGWQRERTTAGKSSSFSPKLAYILLVVFIIVFFFVSFIYFYMRRSSTHPATADNIQGQALVASRPLIVVAVVAEAAGECSIYLEGVAEGEDVKMTAHCRHIFHANCIDTWLENHVTCPVCRHSEMGGEEELVTVGGGGGGGGEEEDATK* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1774 195 Pfam Ring finger domain 124 167 IPR001841 -
Pvu11g1774 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 172 IPR013083 -
Pvu11g1774 195 SMART ring_2 125 166 IPR001841 -
Pvu11g1774 195 PANTHER RING-H2 FINGER PROTEIN ATL11 120 169 - -
Pvu11g1774 195 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Pvu11g1774 195 SUPERFAMILY RING/U-box 118 169 - -
Pvu11g1774 195 CDD RING-H2_EL5_like 124 167 - -
Pvu11g1774 195 PANTHER RING FINGER DOMAIN-CONTAINING 120 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1774 Pvu-Chr11 44226679 44227710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1774 68 193 C3H Transcription Factor Family AT2G27940 30.323 4.43e-16 72.0