Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1770 CGAAACATCGTTGTTCCTCCTCTCCCTGGTTTCTTGCCGCTACAGCCAAGAACAGCAGGAAAGTCCAGTAGCTTCAGTCCAAAACTTGCTTACATACTTCTGGTTGTCTTCATCATCGTCGTTTTCTTCGTCTCTTTTATATACTTCTACATGCGAAGGAGCTCGACGAACCCCGCGGCGGCCGGCAACATCCAAGGACAAGCGCCCGTGGCTTCGAGACCTCTGACTGTGGTGGCCGTGGTGGCCGAAGCAGCTGGGGAGTGCAGTATCTGCCTGGAGGGGGTGGCAGAGGGAGAAGACGTGAAGATGACTGCGCATTGCAGGCACATCTTCCACGCGAACTGCATCGACACTTGGTTGGAGAACCATGTGACGTGCCCGGTGTGCCGATATTCCGAGATGGGTGGAAAGGAGGAGGTGAATAAGAAGAAGATGCAACAGAGTAGTAGGGAGTGA 456 0.5395 RNIVVPPLPGFLPLQPRTAGKSSSFSPKLAYILLVVFIIVVFFVSFIYFYMRRSSTNPAAAGNIQGQAPVASRPLTVVAVVAEAAGECSICLEGVAEGEDVKMTAHCRHIFHANCIDTWLENHVTCPVCRYSEMGGKEEVNKKKMQQSSRE* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1770 151 PANTHER RING FINGER DOMAIN-CONTAINING 17 147 - -
Pvu11g1770 151 SMART ring_2 88 129 IPR001841 -
Pvu11g1770 151 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Pvu11g1770 151 SUPERFAMILY RING/U-box 81 132 - -
Pvu11g1770 151 CDD RING-H2_EL5_like 87 130 - -
Pvu11g1770 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 135 IPR013083 -
Pvu11g1770 151 Pfam Ring finger domain 87 130 IPR001841 -
Pvu11g1770 151 PANTHER RING-H2 FINGER PROTEIN ATL57 17 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1770 Pvu-Chr11 44174026 44174481 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1770 15 130 Rapid Response to Elicitors AT3G05200 35.766 2.57e-19 81.3