Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1768 ATGGTGGCCGAACCAGCTGGGGAGTGCAGTATCTGCCTGGAGGGGGTGGTAGAGGGAGAAGACGTGAAGATGACTGCGCATTGCAGGCACATCTTCCACGCGAACTGCATCGACACTTGGTTGGAGAACCATGCGACGTGCCCGGTGTGCCGATATTCCGAGATGGGTGGAAAGGAGGAGAACAACGGAAAATCAGTGCAACGAGACAGAGCAACCGGAGAAACAACCATGCAGCGAAGTTTCGCCGTTCCTCCTCTCCCTGGTTTCTTGTCGCCGCCGCCAAGAACTGCAGGAAAGTCCAGTAGCTTCAGTCCAAAACTTGCTTACATACTTCTGATTGTCTTCATCATCGTCGTCTTCTTGGTCTCTTTTACATACTTCTACTTGCGAAGGAGCACGACGAACCCCGCGGCGGTCGGCAACATCCAAGGGCAAGCGCCCGTGGCTTCGAGACCTCTGACTGTGGTGGTCGTGGTGGCCGAAGTTGTTGGGGAGTGCAGTATCTGCCTGGAGGGGGTGGCAGAGGGAGAAGACGTAAAGATGACTGCGCATTGCAGGCACATCTTCCACGCGAACTGCATCGACACTTGGTTGGAGAACCATGTGACGTGCCCGGTGTGCCGATATTCCGAGATGGGTGGAGAGGAAGAGGTGAAGAAGAAGAAGATGCAACAGAGTAGTAGGGAGTGA 690 0.5493 MVAEPAGECSICLEGVVEGEDVKMTAHCRHIFHANCIDTWLENHATCPVCRYSEMGGKEENNGKSVQRDRATGETTMQRSFAVPPLPGFLSPPPRTAGKSSSFSPKLAYILLIVFIIVVFLVSFTYFYLRRSTTNPAAVGNIQGQAPVASRPLTVVVVVAEVVGECSICLEGVAEGEDVKMTAHCRHIFHANCIDTWLENHVTCPVCRYSEMGGEEEVKKKKMQQSSRE* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1768 229 CDD RING-H2_EL5_like 165 208 - -
Pvu11g1768 229 ProSiteProfiles Zinc finger RING-type profile. 9 51 IPR001841 -
Pvu11g1768 229 Pfam Ring finger domain 165 208 IPR001841 -
Pvu11g1768 229 Pfam Ring finger domain 8 51 IPR001841 -
Pvu11g1768 229 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 53 IPR044675 -
Pvu11g1768 229 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 143 210 IPR044675 -
Pvu11g1768 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 56 IPR013083 -
Pvu11g1768 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 213 IPR013083 -
Pvu11g1768 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED 143 210 - -
Pvu11g1768 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED 7 53 - -
Pvu11g1768 229 CDD RING-H2_EL5_like 8 51 - -
Pvu11g1768 229 SMART ring_2 166 207 IPR001841 -
Pvu11g1768 229 SMART ring_2 9 50 IPR001841 -
Pvu11g1768 229 SUPERFAMILY RING/U-box 8 53 - -
Pvu11g1768 229 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Pvu11g1768 229 SUPERFAMILY RING/U-box 159 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1768 Pvu-Chr11 44169186 44170611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1768 8 51 Rapid Response to Elicitors AT3G05200 52.273 7.90e-12 62.0