Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1764 ATGTCCCATTTCCCATTCCCATTCTTCACTCTCTTCTCAATGTCTCATTCCAACAACCCTAAAATGCATTCCTCCACCACCTTCCTCCACGATCTTCCTCCTCTCAAGAGGCTCCGACTCATTCAACAGCAGCAAGATCAACAACCACATCAAAATCACTTTTTTCACTCTTCACCACAACCACACCAAAATCACTTTTCTGATTTACCCGCCAAAAAACGCAGAGAGTCTCGAACCCCTTCTCCACCCTCTGCTACTACCCTTCACAACTTTTCTCTTCCCGCCAAAAAACGAGTGTGGGCCCCGCACCCCCAAAGTCCCAGTTCCTCAAACGACACCGTTCCCACTTCGGAGACCACGCCCTCCTCAAACGACGCGCTTCCTCTTCCTCCTGCCTTCGATCTCAACATCGAGTACAACCCCGACCTCGGAGAATCCGAAAATGGCGGCGACGACGACGATGGGGTTTTGTGCTGTGTGTGCCAGAGCACGGACGGGGACCCTGAGGACCCGATTGTGTTCTGCGACGGGTGCGACCTCACGGTGCACGCCTCCTGCTACGGGCACCCTCTGTCGAAAGGCGTGCCCGACGGAGACTGGTTCTGCGAACGGTGTCGTGTCGGAGAAGCCGGCGAGAGCAAGGGCTGCGCGTTGTGTCCCTCGAGCGAGGGCGCGATGAAGCGCACCGCGGAGGGCGCCTGGGCGCACGTGGTGTGCGCGCTGTTCGTGCCGGAGGTGTTTTTCCAGGACCCGGAAGGGAGGGAGGGGATCGACTGCTCCATGGTGCCCAAGAAGAGGTGGTCGCAAAGGTGCTACCTTTGCGACGGTTGCGACGGTTGTGCTCTTGTGTGCTCTGAGCCGAAGTGTGGGTTGGCGTTTCATGTGACGTGCGCGCTGAAGAAGGAGCTTTGGATTGAGTACAAGGAAGGGAAGAAAGGTGGCACCATTGTTGCTGGCTTCTGCAAAACGCACACCCAAATATGGGAAAAGCAATCTGGGAAGTACAAAATTGTCCCTCTTGAAGATGAAAAGTAG 1035 0.5575 MSHFPFPFFTLFSMSHSNNPKMHSSTTFLHDLPPLKRLRLIQQQQDQQPHQNHFFHSSPQPHQNHFSDLPAKKRRESRTPSPPSATTLHNFSLPAKKRVWAPHPQSPSSSNDTVPTSETTPSSNDALPLPPAFDLNIEYNPDLGESENGGDDDDGVLCCVCQSTDGDPEDPIVFCDGCDLTVHASCYGHPLSKGVPDGDWFCERCRVGEAGESKGCALCPSSEGAMKRTAEGAWAHVVCALFVPEVFFQDPEGREGIDCSMVPKKRWSQRCYLCDGCDGCALVCSEPKCGLAFHVTCALKKELWIEYKEGKKGGTIVAGFCKTHTQIWEKQSGKYKIVPLEDEK* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1764 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 327 IPR013083 -
Pvu11g1764 344 MobiDBLite consensus disorder prediction 103 126 - -
Pvu11g1764 344 ProSiteProfiles Extended PHD (ePHD) domain profile. 213 325 IPR034732 -
Pvu11g1764 344 MobiDBLite consensus disorder prediction 42 65 - -
Pvu11g1764 344 Pfam PHD-finger 158 206 IPR019787 -
Pvu11g1764 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 210 IPR013083 -
Pvu11g1764 344 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 116 331 - -
Pvu11g1764 344 MobiDBLite consensus disorder prediction 42 136 - -
Pvu11g1764 344 CDD PHD_BRPF_JADE_like 157 205 - -
Pvu11g1764 344 PANTHER PHD FINGER PROTEINS 116 331 - -
Pvu11g1764 344 SUPERFAMILY FYVE/PHD zinc finger 146 218 IPR011011 -
Pvu11g1764 344 ProSitePatterns Zinc finger PHD-type signature. 158 205 IPR019786 -
Pvu11g1764 344 Pfam PHD-zinc-finger like domain 216 323 - -
Pvu11g1764 344 ProSiteProfiles Zinc finger PHD-type profile. 155 208 IPR019787 -
Pvu11g1764 344 SMART PHD_3 157 206 IPR001965 -
Pvu11g1764 344 SMART PHD_3 270 325 IPR001965 -
Pvu11g1764 344 CDD ePHD 216 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1764 Pvu-Chr11 44080640 44082019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1764 44 344 C2H2 Transcription Factor Family AT3G14740 46.243 5.38e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu11g1764 zf-HC5HC2H_2 5e-27 CL0390