Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1760 ATGACTTGCTTCCCATTCTCATTTAGTAGGAAAGTGCCTTCTGCACCAAAACTCGATCCAGATATTGATGAAGAATTCTCAGGCATTCAAAATGTAAGAATCTTTACCTTCAAAGAACTAAAAGTTGCGTCTGACAATTTCAGTCAGTCCAATAAAATTGGGCAGGGTGGCTTTGGTTCTGTTTATAAGGGATTACTAAAAGATGGGAAACTAGCTGCTATAAAAGTTCTTTCAGAAGAATCAACTCAAGGGGTGAAAGAATTTATGACAGAGATTAATGTCATCTCAGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGTTGTTGTGTGGAAGGGAAACACCGAATATTAGTCTACAATTTTCTTGAGAACAATAGCCTTGCGCAAACCATTTTAGGTTCAGGTCACAATAACAATATTTTTGATTGGAAAACAAGATCTAGGATTTGCATTGGGATTGCACGTGGGCTCTCCTATCTACATGAAGAAGTAAAACCACATATTGTTCATAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAAGACCTTACACCTAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCATCATACATGACTCATGTCAGCACTCGTGTGGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCATTAAGGGGGCACCTGACACGTAAAGCAGATATTTACAGCTTTGGTGTACTCCTTGTGGAGATAGTGAGTGGAAGATGTCACACTAATACACGATTACCGATAGGAGAGCAGTTTCTCTTAGAAACGACATGGAAACTTTATCAGCAAAGGGAACTGGTAGGGCTTGTAGATGCATCCCTAGACGGGTATTTCGATGCCGAGGAGGCCTGTACATTTCTGAAAGTTGGACTTCTCTGCACTCAGGACACATCCAAACTCCGGCCACCAATGTCTTCTGTGGTGAAGATGCTCACTGGAGAAATGGACATTGATGAAAGTAAGATAACAAAACCAGGCTTGATTTCAGATTTCATGGACCTGAAAATCAGAGGAGACAAAAAAGATGTTGATAATGATACCAAGGGTTCATCTTCCTACAATGCATCCTCTGCTTCAGATAGCCAGGGTAACACCATGTCATATGCTGCAAGTGCAAGTACAACTGCAACCTTCTCTGTTAAATATGATCCAAGCTTGTAA 1182 0.3993 MTCFPFSFSRKVPSAPKLDPDIDEEFSGIQNVRIFTFKELKVASDNFSQSNKIGQGGFGSVYKGLLKDGKLAAIKVLSEESTQGVKEFMTEINVISEIEHENLVKLYGCCVEGKHRILVYNFLENNSLAQTILGSGHNNNIFDWKTRSRICIGIARGLSYLHEEVKPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYALRGHLTRKADIYSFGVLLVEIVSGRCHTNTRLPIGEQFLLETTWKLYQQRELVGLVDASLDGYFDAEEACTFLKVGLLCTQDTSKLRPPMSSVVKMLTGEMDIDESKITKPGLISDFMDLKIRGDKKDVDNDTKGSSSYNASSASDSQGNTMSYAASASTTATFSVKYDPSL* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1760 393 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Pvu11g1760 393 CDD STKc_IRAK 53 320 - -
Pvu11g1760 393 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1760 393 MobiDBLite consensus disorder prediction 349 373 - -
Pvu11g1760 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Pvu11g1760 393 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1760 393 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Pvu11g1760 393 Pfam Protein kinase domain 48 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1760 393 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Pvu11g1760 393 MobiDBLite consensus disorder prediction 355 373 - -
Pvu11g1760 393 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 376 - -
Pvu11g1760 393 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 2 376 - -
Pvu11g1760 393 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1760 Pvu-Chr11 44020305 44025763 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1760 21 331 Receptor kinase-like Gene Family AT1G53430 54.167 1.41e-109 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu11g1760 Pkinase 2.1e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1760 11 44020305 44025763 Pvu5g0814 5 16785347 16787168 PCT