Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1754 ATGGAAAAATCAAATGATTCAGGTACTAAGAAACCAAAAAGGCTGACATCCGTTGTTTGGAATCACTTTGAAAGGGTTAGAAAGGCTGACATCTGCTATGCTGTCTGTGTGCATTGTAACAAGAGACTTAGTGGATCGAGTAACAGCGGAACTACTCATCTGAGAAATCACTTGATGCGGTGTCTGAAAAGATCAAATTTTGACGTGTCTCAATTACTTGCTGCGAAGAGAAGGAAGAAAGATAATACCATCAGTCTAGCAAACATTAGTTTTGATGAAGGTCAGAGGAAAGAAGAATATGTAAAGCCAACAATCATCAAGTTTGAACAGGAGCACAAGAAAGACGATATCATTAATTTCGGAAGTAGTAAATTTGATCAGGAAAGGAGTCAACATGATCTTGCACGCATGATCATATTACACGGATACCCATTGAGCTTGGTTGAACAAGTAGGATTTAAGGTCTTTGTGAAAAACCTCCAGCCTCTCTTTGAGTTCATGCCAAACGGTGCTGTAGAGGTTTCTTGTATAGATATCTATAGGAGGGAGAAAGAGAAAGTTTATGATATGATAAACAGATTACAGGGAAGGATTAATCTGTCTATTGAAATGTGGTCTTCAACAGAAAATTATTCGTATTTGTGCCTATCTGCTCATTATATTGATGAGGAATGGACATTACAGAAGAAAATCTTGAACTTTGTCACACTTGATTCTTTGCACACTGAAGACTTACTTCCAGAAGTGATTATCAAATGTCTCAATGAATGGGATATTGACGGCAAGCTTTTTGCCTTGACACTTGATGATTGTTCCATCAGTGAGGACATCACCCTTAGAATCAAGGAGCGAGTTTCTGAGAAAAGGCCTTTCTTAAGTACTCGTCAGTTACTTGACATACGCTCTGCAGCACATCTCATAAATTCCATTGCTCAAGATGCCATGGAGGCATTACAGGAGGTGATCCAAAAGATTCGAGAGAGCATTAGATATGTTAGAAGTTCACAAGTAGTGCAAGCAAAATTTAATGAAATTGCTCAGCATGCTACAATTAACACTCAAAAGGTGTTATTTCTTGATTTTCCAGTTCAGTGGAAGTCTACTTATCTCATGCTTGAAACTGCGGTAGAATACAGGAGTGCTTTTTCTCTTTTCCAAGATCACGATCCCTCCTATTCATCTACTCTAAGTGATGAGGAGTGGGAATGGGCCACTTCTGTTACTGGATACTTAAAACTTTTAGTTGAAATTACCAACGTATTTTCGGGAAACAAATTTCCTACTGCTAATGTATATTTCCCTGAGATCTGTGATGCCCATATTCAGTTAATTGATTGGTGTAGAAGTTCAGATAGTTTTCTTAGTCCAATGGCTATGAAGATGAAAGCCAAATTTGACAAGTACTGGGGCAAGTGCAGTTTGGCTTTAGCTCTAGCTGCTGTTCTAGATCCTCGGTTTAAAATGAAGTTGGTTGAGTACTACTACTCCCTAATTTATGGAAGCACTGCACTGGAGCGTATCAAGGAAGTTTCTGATGGTATCAAAGAACTTTTTAATGCGTATTCTATCTGTTCAACTATGATTGATCAAGGCTCAGCCTTGCCTGGCAGCAGTTTGCCTAGTACTAGTTGTAGTTCCAGAGACAGGCTAAAAGGCTTCGACAGATTCCTTCATGAGACATCACAGAGTCAGTCCATGACATCAGACTTGGACAAGTATTTAGAGGAACCAATCTTTCCACGTAATTCCGATTTTAACATATTGAACTGGTGGAAAGTCCACATGCCAAGGTACCCAATTTTGTCTATGATGGCACGCGATGTTCTTGGGACTCCAATGTCAACTTTGGCACCGGAATTGGCATTTACCACTGGGGGCAGAGTGCTAGATTCTTCTCGTAGTTCACTAAACCCGGATACAAGAGAGGCTTTGATATGTACCCAAGATTGGCTCCGAAATGAATCTGGAGATCTAAATCCATCTCCAATCCATTCTGCTCTACCTCTTCTCATCGAATAA 2019 0.3967 MEKSNDSGTKKPKRLTSVVWNHFERVRKADICYAVCVHCNKRLSGSSNSGTTHLRNHLMRCLKRSNFDVSQLLAAKRRKKDNTISLANISFDEGQRKEEYVKPTIIKFEQEHKKDDIINFGSSKFDQERSQHDLARMIILHGYPLSLVEQVGFKVFVKNLQPLFEFMPNGAVEVSCIDIYRREKEKVYDMINRLQGRINLSIEMWSSTENYSYLCLSAHYIDEEWTLQKKILNFVTLDSLHTEDLLPEVIIKCLNEWDIDGKLFALTLDDCSISEDITLRIKERVSEKRPFLSTRQLLDIRSAAHLINSIAQDAMEALQEVIQKIRESIRYVRSSQVVQAKFNEIAQHATINTQKVLFLDFPVQWKSTYLMLETAVEYRSAFSLFQDHDPSYSSTLSDEEWEWATSVTGYLKLLVEITNVFSGNKFPTANVYFPEICDAHIQLIDWCRSSDSFLSPMAMKMKAKFDKYWGKCSLALALAAVLDPRFKMKLVEYYYSLIYGSTALERIKEVSDGIKELFNAYSICSTMIDQGSALPGSSLPSTSCSSRDRLKGFDRFLHETSQSQSMTSDLDKYLEEPIFPRNSDFNILNWWKVHMPRYPILSMMARDVLGTPMSTLAPELAFTTGGRVLDSSRSSLNPDTREALICTQDWLRNESGDLNPSPIHSALPLLIE* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1754 672 Pfam hAT family C-terminal dimerisation region 569 651 IPR008906 GO:0046983
Pvu11g1754 672 SUPERFAMILY beta-beta-alpha zinc fingers 17 64 IPR036236 -
Pvu11g1754 672 SMART bed5 14 64 - -
Pvu11g1754 672 Pfam BED zinc finger 17 60 IPR003656 GO:0003677
Pvu11g1754 672 SUPERFAMILY Ribonuclease H-like 191 653 IPR012337 -
Pvu11g1754 672 PANTHER BED FINGER-RELATED 6 655 IPR045259 -
Pvu11g1754 672 Pfam Domain of unknown function (DUF4413) 422 521 IPR025525 GO:0003677
Pvu11g1754 672 ProSiteProfiles Zinc finger BED-type profile. 14 69 IPR003656 GO:0003677
Pvu11g1754 672 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 6 655 - -
Pvu11g1754 672 Coils Coil 308 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1754 Pvu-Chr11 43931925 43935712 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1754 11 43931925 43935712 Pvu11g1754 11 43931925 43935712 ECH