Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1753 ATGAAACTTGCCTATATCTTTCTCATTGTCTTCATCATCCTCTTCTTCTTCGTCGTCAGATTGGTATTTTTCTACATTCAAAGGCGCTTCTCCTCGACGAACTTCGAGGCCGGTGACATCCACGGGCAAGCGGTGTCGAATCCCGTGGCTTCGAGATCTCTGACGGTGGTGGCCGAGACGGCTGGGGAGTGCACTATATGTCTGGAGGGGGTGGGAGAGGGAGAGGAGGTGAAGATGACTACCCACTGCAAGCACACATTCCACGCGAACTGCTTCGACAGTTGGCTGGAGAACCATGTGACGTGCCCGGTGTACCGGTATTCTGAGATGAGTGGAGAGGAGGAGCTTGTGACGATGGGAGGAGGAGAAGAAGAAGATGCAGAAGTTTCTGGAACAAACTTGGAGTAG 408 0.5245 MKLAYIFLIVFIILFFFVVRLVFFYIQRRFSSTNFEAGDIHGQAVSNPVASRSLTVVAETAGECTICLEGVGEGEEVKMTTHCKHTFHANCFDSWLENHVTCPVYRYSEMSGEEELVTMGGGEEEDAEVSGTNLE* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1753 135 ProSiteProfiles Zinc finger RING-type profile. 64 106 IPR001841 -
Pvu11g1753 135 Pfam Ring finger domain 63 104 IPR001841 -
Pvu11g1753 135 SMART ring_2 64 105 IPR001841 -
Pvu11g1753 135 PANTHER RING-H2 FINGER PROTEIN ATL2 6 108 - -
Pvu11g1753 135 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 108 IPR044675 -
Pvu11g1753 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 111 IPR013083 -
Pvu11g1753 135 SUPERFAMILY RING/U-box 63 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1753 Pvu-Chr11 43931134 43931541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1753 28 128 C3H Transcription Factor Family AT2G27940 32.407 3.89e-16 70.5