Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu11g1750 | ATGAGAAGAGCCCACCTTGCCCTGATCAAACGAGTTTACCCTTTGCGCTGCCACAATGCACGACGCTCGTTCAGCGCACCCCTCCCTCCGCCGCGCGAGGTGGTGGAACCCTTCTGCAACCTCTCCGAAGTCGTTTCCTCCCCTCAAACCTCTCCGTGGGTCCCTCAAATCCTCTCCCTCCTCGACGGGTCCCCTTCCATGGAGTCCAACCTCGACTTCTTCTGCCGCCAATACCTCATCACACTCTCCCCCTCCTTCATCTCCCACACCCTCCGCTCCCTCTCCGACCACCTCACCGCCACGCGCTTCTTCTCCTGGGCCGCCGCACAGCCCAACTACTCCCACTCCCTCGACTGCCACGTCTCCCTCCTCCACCTCCTTCCCCCCTCCTCCCTCCCTCCCGCCCTCGACGCCCTCCGCCGCGCCAACCTCCCCATGACCCTCCCCGCCGCCCACTCCCTCGCCAAAACCCTCGCCGCCGCCGGCCTCCTCCACGACCTCCTCTGGCTGTTCCGCGCCATGACGGCCAACAACCTCCTCCCCTCCCTCCACACCCTCAACTTCCTCCTCAACGCCCTCGTCAACGCCTCCCTCGTCGACTCCACGGAGCGCGTATTCAAATCAATGCAGGAAAGCGCCTCGCCCAAACCCGACATCGTCAGTTACAACACGCTCCTCAAAGGCTACTGCAAGGTCGGGCGAACGCGGAACGCTTTGGCCACGCTCCGCGAAATGGAGGCTGGAAACGTGCCACCCGATGAGGTCACGTACATGACCCTGATGCAGGCGTGTTACAATGAGGGTGACATGGATTCGTGTGTGAGTCTGTACCATGAGATGGAGGAGGATGAAGTGTTGGTAACGAAAATCCCTTCTCACGCGTATAGTTTAACAATATGTGGGTTGTGTAAGCAGGGAAAGGTTGTGGAGGGTTGTTCTGTGTTTGAGAGTATGGTTAAGAAAGGCTGTGTAGCTCACAAGGCTGTGTATACTGCCATAATTGATGGTTATGCCAAGAGCGGGAACATGGATGTGGCGCTCTCGTTTTTGGAGAGGATGAAGGTGGATGGAGTTGAGCCTGATGAGGTTACTTATGGGGCTGTTGTGGGTGGTTTGTGCAAGAGTGGGAAAGTGGAGGAGGCCATGGATTATTATAGGTTTTGTAAGGGTAATGGTGTGGCTGTGAATGCTGTGTTTTATTCGAGTTTGATTGATGGGCTTGGGAAGGTTGGGAGGGTGGATGAGGCGGAGAGGCTGTTTGAGGAGATGGCGGAAGAGGGGTGTCCGCCGGATTCGTATTGTTACAATGCTCTCATGGATGGTTTGTGCAAGAGTGGGAGGGTTGATGAGGCTCTGATGTTGTTTAGGCGGATGGAGCAAGAGGGGTGTGAGCACACGGTTTATACGTTTACTATACTTATTAGTGAGCTCTTCAAGGAGAGGAGGAACGAGGAAGCTTTGAAGCTGTGGGAGGAGATGATCGACAAAGGTGTCACGCCGAATGCTGCATGTTTCAGGGCTCTTTCATTTGGGCTGTGTCTTTCAGGCAAGGTTGCAAGAGCTTGCAGGGTGTTGGATGAGCTTGCCCCAATGGGGATTGTTCTGGAGAGAGCGTATGAGGACATGATTGGTGTGCTGTGCAAGGCTGGCCGTGTTAAGGAGGCCTGCAAATTGGCTGATGGGATTGTGGATAGGGGCAGGGAAATACCAGGAAAGGTTCGGACTGTGCTGATCAATGCCTTGAGGAAGGCTGGTAATGCAGATTTAGCGATTAAGTTAATGCATAGCAAGATTGGTATTGGGTATGATCGAATGCGTAGTGTTAAAAAGCGAGTGAAATTCCAAACACTCTTCGACAGCTGA | 1863 | 0.548 | MRRAHLALIKRVYPLRCHNARRSFSAPLPPPREVVEPFCNLSEVVSSPQTSPWVPQILSLLDGSPSMESNLDFFCRQYLITLSPSFISHTLRSLSDHLTATRFFSWAAAQPNYSHSLDCHVSLLHLLPPSSLPPALDALRRANLPMTLPAAHSLAKTLAAAGLLHDLLWLFRAMTANNLLPSLHTLNFLLNALVNASLVDSTERVFKSMQESASPKPDIVSYNTLLKGYCKVGRTRNALATLREMEAGNVPPDEVTYMTLMQACYNEGDMDSCVSLYHEMEEDEVLVTKIPSHAYSLTICGLCKQGKVVEGCSVFESMVKKGCVAHKAVYTAIIDGYAKSGNMDVALSFLERMKVDGVEPDEVTYGAVVGGLCKSGKVEEAMDYYRFCKGNGVAVNAVFYSSLIDGLGKVGRVDEAERLFEEMAEEGCPPDSYCYNALMDGLCKSGRVDEALMLFRRMEQEGCEHTVYTFTILISELFKERRNEEALKLWEEMIDKGVTPNAACFRALSFGLCLSGKVARACRVLDELAPMGIVLERAYEDMIGVLCKAGRVKEACKLADGIVDRGREIPGKVRTVLINALRKAGNADLAIKLMHSKIGIGYDRMRSVKKRVKFQTLFDS* | 621 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu11g1750 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 253 | 287 | IPR002885 | - | |
| Pvu11g1750 | 620 | Gene3D | Tetratricopeptide repeat domain | 89 | 292 | IPR011990 | GO:0005515 | |
| Pvu11g1750 | 620 | Gene3D | Tetratricopeptide repeat domain | 409 | 536 | IPR011990 | GO:0005515 | |
| Pvu11g1750 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 466 | 500 | IPR002885 | - | |
| Pvu11g1750 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 291 | 325 | IPR002885 | - | |
| Pvu11g1750 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 326 | 360 | IPR002885 | - | |
| Pvu11g1750 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 396 | 430 | IPR002885 | - | |
| Pvu11g1750 | 620 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 15 | 619 | - | - | |
| Pvu11g1750 | 620 | SUPERFAMILY | HCP-like | 332 | 499 | - | - | |
| Pvu11g1750 | 620 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL | 15 | 619 | - | - | |
| Pvu11g1750 | 620 | Gene3D | Tetratricopeptide repeat domain | 293 | 407 | IPR011990 | GO:0005515 | |
| Pvu11g1750 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 361 | 395 | IPR002885 | - | |
| Pvu11g1750 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 431 | 465 | IPR002885 | - | |
| Pvu11g1750 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 298 | 324 | IPR002885 | - | |
| Pvu11g1750 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 220 | 254 | IPR002885 | - | |
| Pvu11g1750 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 329 | 362 | IPR002885 | - | |
| Pvu11g1750 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 433 | 465 | IPR002885 | - | |
| Pvu11g1750 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 468 | 502 | IPR002885 | - | |
| Pvu11g1750 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 400 | 432 | IPR002885 | - | |
| Pvu11g1750 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 255 | 285 | IPR002885 | - | |
| Pvu11g1750 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 363 | 386 | IPR002885 | - | |
| Pvu11g1750 | 620 | Pfam | PPR repeat | 294 | 323 | IPR002885 | - | |
| Pvu11g1750 | 620 | Pfam | PPR repeat | 542 | 563 | IPR002885 | - | |
| Pvu11g1750 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 218 | 252 | IPR002885 | - | |
| Pvu11g1750 | 620 | Gene3D | Tetratricopeptide repeat domain | 537 | 597 | IPR011990 | GO:0005515 | |
| Pvu11g1750 | 620 | Pfam | PPR repeat family | 217 | 265 | IPR002885 | - | |
| Pvu11g1750 | 620 | Pfam | PPR repeat family | 473 | 513 | IPR002885 | - | |
| Pvu11g1750 | 620 | Pfam | PPR repeat family | 396 | 444 | IPR002885 | - | |
| Pvu11g1750 | 620 | Pfam | PPR repeat family | 329 | 374 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu11g1750 | Pvu-Chr11 | 43895301 | 43900547 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu11g1750 | 209 | 594 | Miscellaneous Gene Families | AT4G11690 | 25.831 | 1.15e-41 | 156 |