Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1749 ATGAAGATTCAGTGCAACGTCTGCGAGGCTGCGGAGGCCAAGGTCCTGTGTTGCGCTGACGAGGCCGCACTGTGCTTGGAATGCGATGAAAAGGTTCACGCCGCCAACAAGCTCGCCACCAAGCACCAAAGAGTTCCCCTCTCTCTCTCTGCTTCCCACGTGCCAAAGTGTGACATATGCCAGGAAATGGTTGGTTATTTCTTCTGTTTAGAGGATCGGGCTTTGCTATGTAGGAATTGTGATGTATCTGTTCACACTGCTAATGCCTGTGTCTCTGGTCATCAAAGGTTTTTGCTTACTGGTGTGAGAGTAGGCCTTGAAGCTACTGAGTGTGGTGCTTCCTCGTCCTCTGTCAAGTCACAATCTGGGGAGAAAACATCTGATGCTAAATCTTCATCCATCTCCAGAAATGTCTCCTCCCTGCCTCAGCCATCAAATTTCAATGAAGTGCTACCCTCCCAAATGGGAGCATTTGAGGACTTTCCACCAAACAAGGTGTCTTATGGTGGTGGTTATACTGCTGGAAACGTCTCACAATGGCCCATGGAAGAATTTCTCGGGTTAAACGAATTCAGTCAGTATTATAACTATATGGATGGATCATCTAAGGCTGACAGTGGTAAACCTGGGGATTCTGATTCTTCAGTTTTGAGGTCTATTGAAGAGGAAATGGATGATGACTCCTTCTTGGGGCGTGTCCCAGATTCATCCTGGACAGTTCCTCAGATCTCTTCCCCTCCTACGGCTTCCGGATTACACTGTCCGGAAATCCGTCGGTATACATCTGACAATGCTATGTTTGTTCCTGACATATCCTTTTCTGACGTCCGGCGGCAGCCTCACCATGTTCTTCATAACTCTATTCATTCAAAACGGAGGAGGAACCTATAA 891 0.4747 MKIQCNVCEAAEAKVLCCADEAALCLECDEKVHAANKLATKHQRVPLSLSASHVPKCDICQEMVGYFFCLEDRALLCRNCDVSVHTANACVSGHQRFLLTGVRVGLEATECGASSSSVKSQSGEKTSDAKSSSISRNVSSLPQPSNFNEVLPSQMGAFEDFPPNKVSYGGGYTAGNVSQWPMEEFLGLNEFSQYYNYMDGSSKADSGKPGDSDSSVLRSIEEEMDDDSFLGRVPDSSWTVPQISSPPTASGLHCPEIRRYTSDNAMFVPDISFSDVRRQPHHVLHNSIHSKRRRNL* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1749 296 Gene3D Classic Zinc Finger 1 92 - -
Pvu11g1749 296 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Pvu11g1749 296 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pvu11g1749 296 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pvu11g1749 296 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 294 - -
Pvu11g1749 296 CDD Bbox1_BBX-like 5 47 - -
Pvu11g1749 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pvu11g1749 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 294 - -
Pvu11g1749 296 MobiDBLite consensus disorder prediction 115 146 - -
Pvu11g1749 296 MobiDBLite consensus disorder prediction 235 254 - -
Pvu11g1749 296 CDD Bbox1_BBX-like 56 99 - -
Pvu11g1749 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pvu11g1749 296 MobiDBLite consensus disorder prediction 235 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1749 Pvu-Chr11 43886488 43890317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1749 1 274 C2C2-CO-like Transcription Factor Family AT1G78600 47.910 4.95e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu11g1749 zf-B_box 3e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1749 11 43886488 43890317 Pvu11g1749 11 43886488 43890317 ECH