Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1742 ATGTCTTCTTCTTCTTCCTCCTCCTCCTCCAATGAACTCATCCTCACTAGCTCCCCCGACGGGCCCATCATGGTGTACGACACCGTTAGCCCCACCGCCGTCACGCAGTTCTCCAGCAGCCGATCGCCGTCTCGTGGCCTCGCCATAGTGGGCCGGAGACTGCTGGCTGCCTCACACGTGTCCCCAGACACGGGTGCAGGCTCCATCAACATCTACAACTGGCACGGTTCTGGTGTGTTCCGTAACTTCCCTGTGCCTGAACCCGTTGCCCCTCTCATTGCTACCTCCGATGGAGCGTTTCTCCTTGGTGGTGGCATCTCAGGGAGTGTTGTATCTCTTTCAAGTTCTTCCGGGGATGTCATCAGATCAATTGCTGTACACTCCAGTCCAGTTTCTAGTCTTCATCTCACCGATGATGGGTCACTCCTTATTTCAGGTAGTGAAGATGGGACTATTGTTATTGTCCCTAGCTTTAAGATCGTTGGTGGGGGTTCCGAGGAGGAGGAGGAGGATGAGGAAGACTTGGTCATGAACAAATGGAAGGCACATTCTGATTCCGTGACTGATTTGAAGTCTGTGATGAAGACTTTGGTTTCTTGCTCATCAGACTGCACATGCAAGTTTTGGAATCTGGGGGACCGCGGGATCCTTATGCGGACTGTGGCATTCCCATGCTGCATTTCTGGGGTTGCCTTGGATTCCACTGAGACAGCGTTTTACGCTGGTGGAGCAGATGGGTATGTTTATAATGGGAGTATGAAAGTGGTGGGTGAGGCTTGTGAGGTGAGGAACTGGGCTAGGGTTCATGGTGGGTCAGTTGTGGCATTGGGTTTGGTGAATGGAGAGAGGGGTTTGGTGTCTGCTGCAGAAGATGGGAGTGTGTGGATGTGGGATGTTGAGAAAGGAGAAGTCATAATGGTGTTTGGAGATGAACTGATAACCGTTAGTGACATGATTGTGATCAAGGGAAATGGTGGTGGGTTTGGAGATGGAAAGGGGAGTAATAATAATTTTGCAGTTGGGAAAGGTAGTGGTTCCTTCATTTCTTCTGGGTTATGTGAGGAGCACATGCTTAGAACCCTAAACAAAATCACAGAGCTTGAGGAGGTGAAGGATGTTGTGTTTCATGACAAGAAAAAGGCCATTGACATGCTGGAAACTGTGATTCAAATGTATGAGAGACTTTTGGAGCTTATCCTTAAGGAAGTTACCAAAGCCATTGTAGAAGAAGAAGGAGAAGATGCTGCTGAAGAAGAGAAAGATGAGAAAGATGAGAAAGCTGAGAAAGATGAGAAAGATGAGAAAGCTGAGAAAGATGGGAAAGATGAGAAAGCTGAAGAGGAACAGGGAAAAGATGATAATTAA 1365 0.4835 MSSSSSSSSSNELILTSSPDGPIMVYDTVSPTAVTQFSSSRSPSRGLAIVGRRLLAASHVSPDTGAGSINIYNWHGSGVFRNFPVPEPVAPLIATSDGAFLLGGGISGSVVSLSSSSGDVIRSIAVHSSPVSSLHLTDDGSLLISGSEDGTIVIVPSFKIVGGGSEEEEEDEEDLVMNKWKAHSDSVTDLKSVMKTLVSCSSDCTCKFWNLGDRGILMRTVAFPCCISGVALDSTETAFYAGGADGYVYNGSMKVVGEACEVRNWARVHGGSVVALGLVNGERGLVSAAEDGSVWMWDVEKGEVIMVFGDELITVSDMIVIKGNGGGFGDGKGSNNNFAVGKGSGSFISSGLCEEHMLRTLNKITELEEVKDVVFHDKKKAIDMLETVIQMYERLLELILKEVTKAIVEEEGEDAAEEEKDEKDEKAEKDEKDEKAEKDGKDEKAEEEQGKDDN* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1742 454 SMART WD40_4 117 156 IPR001680 GO:0005515
Pvu11g1742 454 SMART WD40_4 173 210 IPR001680 GO:0005515
Pvu11g1742 454 SMART WD40_4 258 298 IPR001680 GO:0005515
Pvu11g1742 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515
Pvu11g1742 454 PANTHER OS09G0477800 PROTEIN 7 412 - -
Pvu11g1742 454 Gene3D - 157 383 IPR015943 GO:0005515
Pvu11g1742 454 Gene3D - 2 154 IPR015943 GO:0005515
Pvu11g1742 454 MobiDBLite consensus disorder prediction 422 454 - -
Pvu11g1742 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 154 IPR001680 GO:0005515
Pvu11g1742 454 MobiDBLite consensus disorder prediction 410 454 - -
Pvu11g1742 454 Pfam WD domain, G-beta repeat 120 154 IPR001680 GO:0005515
Pvu11g1742 454 Pfam WD domain, G-beta repeat 179 210 IPR001680 GO:0005515
Pvu11g1742 454 SUPERFAMILY WD40 repeat-like 8 319 IPR036322 GO:0005515
Pvu11g1742 454 PANTHER WD-REPEAT PROTEIN 18 7 412 IPR045227 -
Pvu11g1742 454 Coils Coil 409 435 - -
Pvu11g1742 454 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1742 104 301 U-box Gene Family AT2G33340 26.699 3.41e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1742 11 43817488 43819059 Pvu5g0630 5 8513646 8513944 PCT