Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1680 ATGAATTTTTCAAAGATTGCGCGCTCTCTTTCGCGCTCATCTAGAAATTTGTTACACGGTAATGGGAGATTGGGAACGCTTACAGGAATACCCCGGACGAATGGGTGTTCTGATGGAGCGGAATCGGTATTAGGGTTTGTTAGGAGCTATGTTTCTTCTGCCAGAGCTTCCAATCACAGCATCTTTTCCAATTTGCTTGATTTCAAATCTGTTGCTGCAAACCCTAAGCTTCGCCGATTCTTTTCCAGTGAAGCCCCAAAGAAAAAGAATTATGAAAAGTTTTATCCCAAAGAAAAGAAGGAAGTTCCGAAGGAAAATGACAAAAAATTCGATTCTAAAGACAACTCAAATGCAAACACAGATGATCATGGAAGTTTTCAGGAAGCTTTCATGAAGCAAGTTCAGAATATAATTACCCCATTATTGGTGATGGGGCTATTTCTTACAACCTTTTCTAGTAGTCCTCGTGAACAGCAGGAGATTAGCTTTCAGGAATTTAAAAATAAGCTTTTGGAACCGGGATTAGTAGACCATATTGTTGTCTCAAACAAATCGGTTGCCAAAGTATATGTAAGTAACTCTCCTCACAACAAAACAGATAGTGAAGTAGTCCAAGGGACCCTGCCTGCAAAGGAATATGGAGGCGAGTATAAATATTATTTTAATATTGGAAGTGTTGAGTCTTTTGAGGAGAAGCTACAGGAAGCGCAAGAAGCTCTTGGCATTGACTCTCATAATTTTGTGCCTGTAACATATTCTGCTGAGATGGTTTGGTACCAGGAACTGATGAGATTTGCTCCAACACTGTTATTGTTGGGATCTCTCTTGTATATGGGAAGGAGAATGCAAGGTGGACTTGGTGTTGGTGGAGGTGGTGGTGGTAAGGGTGCTCGTGGAATATTCAACATAGGAAAAGCCCATGTTACAAAAGTAGACAAAAATACTAAAAATAAGATCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAACTTGAAATTATGGAGTTCGTCCACTTCCTCAAGAACCCAAAGAAATATGAAGATCTTGGTGCAAAAATTCCAAAAGGTGCTCTGTTGGTGGGTCCTCCAGGTACAGGAAAAACACTTTTAGCAAAAGCAACTGCAGGGGAGTCTGGGGTGCCATTTCTTTCTATATCTGGTTCTGATTTCATGGAAATGTTTGTTGGTGTTGGACCATCAAGGGTGAGAAATTTGTTTCTCGAAGCAAGGCAGTGTGCTCCTAGTATAATATTTATTGATGAGATTGATGCAATTGGCCGAGCAAGGGGCCGTGGTGGTTTTTCTGGTGCAAATGATGAGCGTGAAAGTACATTGAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACCACTTCTGGAGTTGTTGTGTTGGCAGGAACGAATAGGCCTGATATCTTAGATAAAGCTCTTCTTAGGCCTGGGCGATTTGACCGCCAAATAGCAATTGACAAACCTGATATTAAAGGTCGTGATCAGATATTTCAGATCTACTTGAAGAAGATCAAACTTGATCAGGAACCTTCATATTATTCTCAAAGGCTTGCAGCCCTTACTCCCGGATTTGCTGGAGCAGACATTGCAAATGTCTGCAATGAAGCGGCTCTGATTGCTGCAAGACGTGAGGTGACACAAGTCACAATGGACCATTTTGAGTCAGCCATCGATAGGATCATTGGTGGTTTGGAAAAGAAGAACAAGGTAATAAGCAAGGTGGAAAGGCGTACTGTTGCTTACCATGAATCAGGCCATGCTGTTGCAGGTTGGTTCTTGGAACACGCTGAGCCCTTGTTAAAAGTAACCATCGTTCCACGTGGCTCAGCAGCTCTTGGATTTGCACAATATGTTCCAAGCGAAAACCTTCTCATGACAAAGGAACAGCTTTTTGATATGACTTGCATGACACTTGGTGGTCGGGCTGCTGAGCAGGTTCTTGTAGGGAAAATATCAACAGGAGCACAAAATGATTTGGAAAAAGTTACCAAGATGACATATGCCCAAGTAGCAGTTTATGGTTTCAGCGAGAAAGTGGGTCTCCTTTCGTTCCCTCCAAGAGAGGACTCATTTGAGATGTCCAAACCATACAGCAGTAAAACTGCTGCAATCATCGATAGCGAAGTGCGAGAGTGGGTGAACAAAGCATACGAACGAACGGTACAACTAATCGAGGAACACAAGGAACAAGTTGCTCAAATTGCTGAGTTGTTGCTTGAAAAAGAAGTACTTCACCAGGAGGACTTGCATCGAATTTTGGGTGAGCGACCATTCAAAAGTATTGAACCGACCAATTATGATAGATTTAAGGAAGGCTTTAAAGAAGAGGAGGAGGAAAAGGTAGCAGAAAGTATCATCGTAGATGTGCCTGAGCAAGGTGGCGGATCTTCTCCTTTAGAGCCCCAGGTTGTTCCCAGATAG 2436 0.4224 MNFSKIARSLSRSSRNLLHGNGRLGTLTGIPRTNGCSDGAESVLGFVRSYVSSARASNHSIFSNLLDFKSVAANPKLRRFFSSEAPKKKNYEKFYPKEKKEVPKENDKKFDSKDNSNANTDDHGSFQEAFMKQVQNIITPLLVMGLFLTTFSSSPREQQEISFQEFKNKLLEPGLVDHIVVSNKSVAKVYVSNSPHNKTDSEVVQGTLPAKEYGGEYKYYFNIGSVESFEEKLQEAQEALGIDSHNFVPVTYSAEMVWYQELMRFAPTLLLLGSLLYMGRRMQGGLGVGGGGGGKGARGIFNIGKAHVTKVDKNTKNKIYFKDVAGCDEAKLEIMEFVHFLKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFLEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQIAIDKPDIKGRDQIFQIYLKKIKLDQEPSYYSQRLAALTPGFAGADIANVCNEAALIAARREVTQVTMDHFESAIDRIIGGLEKKNKVISKVERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGSAALGFAQYVPSENLLMTKEQLFDMTCMTLGGRAAEQVLVGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPPREDSFEMSKPYSSKTAAIIDSEVREWVNKAYERTVQLIEEHKEQVAQIAELLLEKEVLHQEDLHRILGERPFKSIEPTNYDRFKEGFKEEEEEKVAESIIVDVPEQGGGSSPLEPQVVPR* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1680 811 Pfam FtsH Extracellular 140 246 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Pvu11g1680 811 MobiDBLite consensus disorder prediction 92 123 - -
Pvu11g1680 811 MobiDBLite consensus disorder prediction 92 118 - -
Pvu11g1680 811 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 258 758 IPR005936 GO:0004176|GO:0004222|GO:0016020
Pvu11g1680 811 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 5 785 IPR005936 GO:0004176|GO:0004222|GO:0016020
Pvu11g1680 811 MobiDBLite consensus disorder prediction 792 811 - -
Pvu11g1680 811 Gene3D Peptidase M41 578 775 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu11g1680 811 Gene3D - 302 491 IPR027417 -
Pvu11g1680 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 565 IPR027417 -
Pvu11g1680 811 Gene3D - 144 257 - -
Pvu11g1680 811 SMART AAA_5 354 494 IPR003593 -
Pvu11g1680 811 ProSitePatterns AAA-protein family signature. 462 480 IPR003960 GO:0005524|GO:0016887
Pvu11g1680 811 Gene3D - 493 577 - -
Pvu11g1680 811 Pfam Peptidase family M41 575 757 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu11g1680 811 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 31 810 - -
Pvu11g1680 811 PANTHER ATP-DEPENDENT PROTEASE 31 810 - -
Pvu11g1680 811 CDD AAA 355 492 - -
Pvu11g1680 811 Pfam AAA+ lid domain 521 559 IPR041569 -
Pvu11g1680 811 Pfam ATPase family associated with various cellular activities (AAA) 359 491 IPR003959 GO:0005524|GO:0016887
Pvu11g1680 811 SUPERFAMILY FtsH protease domain-like 575 766 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1680 Pvu-Chr11 42554223 42560391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1680 3 810 Miscellaneous Gene Families AT2G29080 75.000 0.0 1164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0601 5 7772417 7774978 Pvu11g1680 11 42554223 42560391 PCT