Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1637 ATGGAATCTAAATACTTCGACACCATTGGGGAAGTCTCCCTAAAGCAAAAATCAAAATCGATTTCAGCAGAGCCAACAATCTCTACTAGTGAAAATGATTGCTTTGATTGCAATATTTGTTTGGAATCAGCACATGACCCTGTGGTTACACTCTGTGGTCACCTTTACTGTTGGCCATGCATATACAAGTGGCTTGATGTTCAAAACTCCTCTGTTGAACCAGACCATCAGAAGACATGCCCAGTTTGCAAATCTCAGATCTCTCACACCTCTGTAGTCCCCCTCTATGGCCGTGGAACATCAAATCCAGAATCAAAAGCCAAAAAACTCCAGATGAGTCTAGGAATACCTCACAGGCCACCTCCTTACAGCCTGAATGACATGTTAACTTCTGCTCGTGCACCAGCACAATCTGGCCAGCAACTTCGTTCAAGTTATTTCCAGTCACAGGCAAGACCAATTCATTATCAGCAGTACTTCCCTGACCTCTATGGAAGCTATGGCACCAATGGGTTGCCTTATCTTGGAGGTGCTGCTATGACTAGCTTCTTTAATCCTATGATTGGTATGTTTGGGGAGATGGTCTTGACAAGAATTTTTGGGGTCTCAGATGCAAACTTGTTTTCATACCCTCATAATGGAAATGGAAGTCCTAGAATGAGAAGGCAAGAAATGCAGATTGACAGGTCTCTGAACAGACTATCCATCTTTCTCCTATGTTGTATCATTTTGTGTCTTCTCTTATTTTGA 750 0.4253 MESKYFDTIGEVSLKQKSKSISAEPTISTSENDCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLDVQNSSVEPDHQKTCPVCKSQISHTSVVPLYGRGTSNPESKAKKLQMSLGIPHRPPPYSLNDMLTSARAPAQSGQQLRSSYFQSQARPIHYQQYFPDLYGSYGTNGLPYLGGAAMTSFFNPMIGMFGEMVLTRIFGVSDANLFSYPHNGNGSPRMRRQEMQIDRSLNRLSIFLLCCIILCLLLF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1637 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 249 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pvu11g1637 249 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Pvu11g1637 249 SMART ring_2 37 83 IPR001841 -
Pvu11g1637 249 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Pvu11g1637 249 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Pvu11g1637 249 SUPERFAMILY RING/U-box 33 96 - -
Pvu11g1637 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 4 249 - -
Pvu11g1637 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 156 IPR013083 -
Pvu11g1637 249 CDD RING-HC_AtRMA_like 35 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1637 Pvu-Chr11 41584638 41586659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1637 15 235 C3H Transcription Factor Family AT4G27470 47.577 2.39e-58 184