Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1631 ATGGCGAAAACGAGGCCAGGCAGAAAGGACTTGGACTCGTACACCATAAGAGGAACCAACAAGATCGTCCGAGATGGGGTTGTCGTTGACAGCGTTTCGTTCTTTGGTGCTGCAGCCGGTGATTGCGTTCTGATGCGGCCCTCCGACACGTCGAAGCCCCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAGGACAACAGGAACAACGTCAAGGTGCGTGTGAGGTGGTACTACAGACCCGAAGAGTCCATTGGTGGTCGCAGACAGTTCCATGGTGCCAAAGAGCTTTTTCTCTCCGACCACTATGATGTGCAGAGTGCGCACACCATTGAAGGCAAATGCGTTGTACACTCTTTCAAGAACTACACTAAGCTCGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTTGAGTACAAGGCTGCCACTGGGGCTTTCACTCCGGACCGTGTTGCTGTGTATTGCAAGTGTGAGATGCCATATAACCCGGATGACCTCATGGTTCAATGTGAAGGGTGCAAGGATTGGTATCATCCTGCTTGTGTGGGCATGACTATCGAAGAAGCAAAGAAATTAGATCATTTTGTGTGTTCTGAATGTTCATCTGATGATGATATGAATATTAAGAAACCGCAAGCTACGTTTTCTGCATCACCAGTAGCTGATGGCAAGGTGGAGCCCAAGAGGCGAAAGAGATGA 699 0.4964 MAKTRPGRKDLDSYTIRGTNKIVRDGVVVDSVSFFGAAAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMNIKKPQATFSASPVADGKVEPKRRKR* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1631 232 SUPERFAMILY FYVE/PHD zinc finger 146 203 IPR011011 -
Pvu11g1631 232 CDD BAH_BAHCC1 40 170 - -
Pvu11g1631 232 PANTHER OS08G0421900 PROTEIN 3 228 - -
Pvu11g1631 232 PANTHER BNAC03G64850D PROTEIN 3 228 IPR045205 GO:0006325|GO:0035064
Pvu11g1631 232 SMART PHD_3 154 201 IPR001965 -
Pvu11g1631 232 Pfam PHD-finger 154 202 IPR019787 -
Pvu11g1631 232 MobiDBLite consensus disorder prediction 209 232 - -
Pvu11g1631 232 Gene3D - 9 148 IPR043151 -
Pvu11g1631 232 SMART BAH_4 38 150 IPR001025 GO:0003682
Pvu11g1631 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 215 IPR013083 -
Pvu11g1631 232 ProSiteProfiles Zinc finger PHD-type profile. 152 203 IPR019787 -
Pvu11g1631 232 ProSiteProfiles BAH domain profile. 35 150 IPR001025 GO:0003682
Pvu11g1631 232 Pfam BAH domain 38 149 IPR001025 GO:0003682
Pvu11g1631 232 ProSitePatterns Zinc finger PHD-type signature. 155 200 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1631 Pvu-Chr11 41443955 41447640 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1631 45 146 Core DNA Replication Machinery Family AT4G14700 29.126 3.87e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu11g1631 BAH 1.5e-23 No_clan