Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1627 ATGGGAGAATCACAGAACCACCTTCTCCTTCACCAAACAGCAACACCGTCGAGATCGACGATGAGAGGCGGCGGCGTCGGCGAGATCGTGGAGGTGCAAGGCGGCCACATTGTCCGCTCCACCGGGCGGAAGGACCGCCACAGCAAGGTCTGCACTGCAAAAGGCCCCAGAGACCGCCGTGTGCGCCTGGCGGCGCACACCGCCATCCAATTCTACGACGTCCAGGACCGCCTCGGCTATGACCGCCCCAGCAAGGCGGTGGACTGGCTCATAAAAAAAGCTAAGGCGGCCATCGACGAGCTCGCAGAGCTCCCACCGTGGAACCCGACGGCCACGTCAATGCAACCGCCTCAGCAACAGGAAATCGTCCTCCGCGACAACAAGTCTCTCTCTATAGAAGACCCAATAGCCTTTGGCAGCCGTGGCGAGAGCAACGTTGTCTCCGGCGCTACCAGAGTTCAAGAACAATTTTCTCACCAACAGTTGGAGAGTGAAAATGCTAACATGAGCAACAGCAAGTACAACAGTGGTCCGGGTTTTCTGCCACCGTCTTTGGACACTGATAACATTGCTGAGACAATCAAGACTTTCTTTCCCGTCGAAGCTACCACGACGTCATTTCAGAGTTACCCTCCGCCGGCACCGGATTTGAGGCAGCAAGATCTTCGTTTGTCGTTGCAGTCCTTTCAGGACCCTATCATGCTTCAGCAAGAGCCTCAGAGCCACCACGAGCCTGTGCTGTTCGCCGGAGCGACGCTCGGCTTCGACGGCGGTTCCGGCTGGTCGGAGCACCAGCACCACCACTCGGAGGAGCATAGGTTTCTCTTTGGTGGCAACAGTGGCCATGGCGGTGGGTTTGTGTTCAACACGCCGGCGCCGGCGTTTGGCCAATTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCAGTTCGTGCTTGGATAGACCCTTCGGTCGATCACCACCACCACAACCATCACTACCTCTCGTCGCTGATCCACCAGGGCTCCGTCGCTGGCGGCTTCTCCGCCGGTGGTGGATTCTCTGGCTTCCGCATTCCAGCACGAATTCAGGGTGAAGAGGAACACGACGGCGTATCCGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1146 0.5785 MGESQNHLLLHQTATPSRSTMRGGGVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPTATSMQPPQQQEIVLRDNKSLSIEDPIAFGSRGESNVVSGATRVQEQFSHQQLESENANMSNSKYNSGPGFLPPSLDTDNIAETIKTFFPVEATTTSFQSYPPPAPDLRQQDLRLSLQSFQDPIMLQQEPQSHHEPVLFAGATLGFDGGSGWSEHQHHHSEEHRFLFGGNSGHGGGFVFNTPAPAFGQFFSQRGPLQSSNTPSVRAWIDPSVDHHHHNHHYLSSLIHQGSVAGGFSAGGGFSGFRIPARIQGEEEHDGVSDKPSSASSDSRH* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1627 381 ProSiteProfiles TCP domain profile. 43 101 IPR017887 -
Pvu11g1627 381 PANTHER TRANSCRIPTION FACTOR TCP4 1 381 - -
Pvu11g1627 381 MobiDBLite consensus disorder prediction 1 20 - -
Pvu11g1627 381 MobiDBLite consensus disorder prediction 358 381 - -
Pvu11g1627 381 MobiDBLite consensus disorder prediction 158 178 - -
Pvu11g1627 381 Pfam TCP family transcription factor 42 167 IPR017887 -
Pvu11g1627 381 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 381 IPR005333 GO:0003700
Pvu11g1627 381 MobiDBLite consensus disorder prediction 357 381 - -
Pvu11g1627 381 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1627 Pvu-Chr11 41334865 41337658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1627 11 381 TCP Transcription Factor Family AT1G53230 49.505 1.19e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pvu11g1627 TCP 3.7e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1627 11 41334865 41337658 Pvu5g1006 5 28857024 28860010 PCT